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1.

New approaches for sensing metabolites and proteins in live cells using RNA.

Strack RL, Jaffrey SR.

Curr Opin Chem Biol. 2013 Aug;17(4):651-5. doi: 10.1016/j.cbpa.2013.05.014. Epub 2013 Jun 6. Review.

2.

Using Spinach-based sensors for fluorescence imaging of intracellular metabolites and proteins in living bacteria.

Strack RL, Song W, Jaffrey SR.

Nat Protoc. 2014 Jan;9(1):146-55. doi: 10.1038/nprot.2014.001. Epub 2013 Dec 19.

3.

Fluorescence imaging of cellular metabolites with RNA.

Paige JS, Nguyen-Duc T, Song W, Jaffrey SR.

Science. 2012 Mar 9;335(6073):1194. doi: 10.1126/science.1218298.

4.

Understanding the photophysics of the spinach-DFHBI RNA aptamer-fluorogen complex to improve live-cell RNA imaging.

Han KY, Leslie BJ, Fei J, Zhang J, Ha T.

J Am Chem Soc. 2013 Dec 18;135(50):19033-8. doi: 10.1021/ja411060p. Epub 2013 Dec 10.

5.

Imaging and tracing of intracellular metabolites utilizing genetically encoded fluorescent biosensors.

Zhang C, Wei ZH, Ye BC.

Biotechnol J. 2013 Nov;8(11):1280-91. doi: 10.1002/biot.201300001. Epub 2013 Sep 25. Review.

PMID:
24591186
6.

RNA-based fluorescent biosensors for live cell imaging of second messengers cyclic di-GMP and cyclic AMP-GMP.

Kellenberger CA, Wilson SC, Sales-Lee J, Hammond MC.

J Am Chem Soc. 2013 Apr 3;135(13):4906-9. doi: 10.1021/ja311960g. Epub 2013 Mar 21.

7.

Fluorescence resonance energy transfer imaging of cell signaling from in vitro to in vivo: basis of biosensor construction, live imaging, and image processing.

Aoki K, Kamioka Y, Matsuda M.

Dev Growth Differ. 2013 May;55(4):515-22. doi: 10.1111/dgd.12039. Epub 2013 Feb 7. Review.

PMID:
23387795
8.

Live Cell Imaging Using Riboswitch-Spinach tRNA Fusions as Metabolite-Sensing Fluorescent Biosensors.

Kellenberger CA, Hallberg ZF, Hammond MC.

Methods Mol Biol. 2015;1316:87-103. doi: 10.1007/978-1-4939-2730-2_8.

PMID:
25967055
9.

Broccoli: rapid selection of an RNA mimic of green fluorescent protein by fluorescence-based selection and directed evolution.

Filonov GS, Moon JD, Svensen N, Jaffrey SR.

J Am Chem Soc. 2014 Nov 19;136(46):16299-308. doi: 10.1021/ja508478x. Epub 2014 Nov 5.

PMID:
25337688
10.

In vitro analysis of riboswitch-Spinach aptamer fusions as metabolite-sensing fluorescent biosensors.

Kellenberger CA, Hammond MC.

Methods Enzymol. 2015;550:147-72. doi: 10.1016/bs.mie.2014.10.045. Epub 2014 Dec 19.

PMID:
25605385
11.

Design, synthesis, and biological application of fluorescent sensor molecules for cellular imaging.

Kikuchi K.

Adv Biochem Eng Biotechnol. 2010;119:63-78. doi: 10.1007/10_2008_42. Review.

PMID:
19649586
12.

Genetically encoded FRET-based biosensors for multiparameter fluorescence imaging.

Carlson HJ, Campbell RE.

Curr Opin Biotechnol. 2009 Feb;20(1):19-27. doi: 10.1016/j.copbio.2009.01.003. Epub 2009 Feb 14.

PMID:
19223167
13.

Optical sensors for monitoring dynamic changes of intracellular metabolite levels in mammalian cells.

Hou BH, Takanaga H, Grossmann G, Chen LQ, Qu XQ, Jones AM, Lalonde S, Schweissgut O, Wiechert W, Frommer WB.

Nat Protoc. 2011 Oct 27;6(11):1818-33. doi: 10.1038/nprot.2011.392.

PMID:
22036884
14.

Visualizing protein-RNA interactions inside cells by fluorescence resonance energy transfer.

Lorenz M.

RNA. 2009 Jan;15(1):97-103. doi: 10.1261/rna.1307809. Epub 2008 Nov 25.

15.

Detection of bioactive small molecules by fluorescent resonance energy transfer (FRET) in RNA-protein conjugates.

Endoh T, Shintani R, Mie M, Kobatake E, Ohtsuki T, Sisido M.

Bioconjug Chem. 2009 Dec;20(12):2242-6. doi: 10.1021/bc9002184.

PMID:
19928953
17.

Imaging approach for monitoring cellular metabolites and ions using genetically encoded biosensors.

Okumoto S.

Curr Opin Biotechnol. 2010 Feb;21(1):45-54. doi: 10.1016/j.copbio.2010.01.009. Epub 2010 Feb 16.

18.

Imaging protein activity in live embryos using fluorescence resonance energy transfer biosensors.

Kardash E, Bandemer J, Raz E.

Nat Protoc. 2011 Nov 3;6(12):1835-46. doi: 10.1038/nprot.2011.395.

PMID:
22051797
19.

Design strategies of fluorescent biosensors based on biological macromolecular receptors.

Tainaka K, Sakaguchi R, Hayashi H, Nakano S, Liew FF, Morii T.

Sensors (Basel). 2010;10(2):1355-76. doi: 10.3390/s100201355. Epub 2010 Feb 12. Review.

20.
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