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Results: 1 to 20 of 109

1.

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA.

Regulski M, Lu Z, Kendall J, Donoghue MT, Reinders J, Llaca V, Deschamps S, Smith A, Levy D, McCombie WR, Tingey S, Rafalski A, Hicks J, Ware D, Martienssen RA.

Genome Res. 2013 Oct;23(10):1651-62. doi: 10.1101/gr.153510.112. Epub 2013 Jun 5.

PMID:
23739895
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA.

Calarco JP, Borges F, Donoghue MT, Van Ex F, Jullien PE, Lopes T, Gardner R, Berger F, Feijó JA, Becker JD, Martienssen RA.

Cell. 2012 Sep 28;151(1):194-205. doi: 10.1016/j.cell.2012.09.001. Epub 2012 Sep 20.

PMID:
23000270
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize.

Wang X, Elling AA, Li X, Li N, Peng Z, He G, Sun H, Qi Y, Liu XS, Deng XW.

Plant Cell. 2009 Apr;21(4):1053-69. doi: 10.1105/tpc.109.065714. Epub 2009 Apr 17.

PMID:
19376930
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize.

Gent JI, Ellis NA, Guo L, Harkess AE, Yao Y, Zhang X, Dawe RK.

Genome Res. 2013 Apr;23(4):628-37. doi: 10.1101/gr.146985.112. Epub 2012 Dec 26.

PMID:
23269663
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Maize RNA polymerase IV defines trans-generational epigenetic variation.

Erhard KF Jr, Parkinson SE, Gross SM, Barbour JE, Lim JP, Hollick JB.

Plant Cell. 2013 Mar;25(3):808-19. doi: 10.1105/tpc.112.107680. Epub 2013 Mar 19.

PMID:
23512852
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Specific tandem repeats are sufficient for paramutation-induced trans-generational silencing.

Belele CL, Sidorenko L, Stam M, Bader R, Arteaga-Vazquez MA, Chandler VL.

PLoS Genet. 2013;9(10):e1003773. doi: 10.1371/journal.pgen.1003773. Epub 2013 Oct 17.

PMID:
24146624
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

RNAi of met1 reduces DNA methylation and induces genome-specific changes in gene expression and centromeric small RNA accumulation in Arabidopsis allopolyploids.

Chen M, Ha M, Lackey E, Wang J, Chen ZJ.

Genetics. 2008 Apr;178(4):1845-58. doi: 10.1534/genetics.107.086272.

PMID:
18430920
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Roles, and establishment, maintenance and erasing of the epigenetic cytosine methylation marks in plants.

Kumar S, Kumari R, Sharma V, Sharma V.

J Genet. 2013 Dec;92(3):629-66. Review.

PMID:
24371187
[PubMed - indexed for MEDLINE]
Free Article
9.

Maize Unstable factor for orange1 is required for maintaining silencing associated with paramutation at the pericarp color1 and booster1 loci.

Sekhon RS, Wang PH, Sidorenko L, Chandler VL, Chopra S.

PLoS Genet. 2012;8(10):e1002980. doi: 10.1371/journal.pgen.1002980. Epub 2012 Oct 4.

PMID:
23055943
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Heritable epigenetic variation among maize inbreds.

Eichten SR, Swanson-Wagner RA, Schnable JC, Waters AJ, Hermanson PJ, Liu S, Yeh CT, Jia Y, Gendler K, Freeling M, Schnable PS, Vaughn MW, Springer NM.

PLoS Genet. 2011 Nov;7(11):e1002372. doi: 10.1371/journal.pgen.1002372. Epub 2011 Nov 17.

PMID:
22125494
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Targets of RNA-directed DNA methylation.

Matzke M, Kanno T, Huettel B, Daxinger L, Matzke AJ.

Curr Opin Plant Biol. 2007 Oct;10(5):512-9. Epub 2007 Aug 16. Review.

PMID:
17702644
[PubMed - indexed for MEDLINE]
12.

Paramutation in maize: RNA mediated trans-generational gene silencing.

Arteaga-Vazquez MA, Chandler VL.

Curr Opin Genet Dev. 2010 Apr;20(2):156-63. doi: 10.1016/j.gde.2010.01.008. Epub 2010 Feb 12. Review.

PMID:
20153628
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Paramutation: a process for acquiring trans-generational regulatory states.

Erhard KF Jr, Hollick JB.

Curr Opin Plant Biol. 2011 Apr;14(2):210-6. doi: 10.1016/j.pbi.2011.02.005. Epub 2011 Mar 17. Review.

PMID:
21420347
[PubMed - indexed for MEDLINE]
14.

Paramutation's properties and puzzles.

Chandler VL.

Science. 2010 Oct 29;330(6004):628-9. doi: 10.1126/science.1191044.

PMID:
21030647
[PubMed - indexed for MEDLINE]
15.

Genome-wide high resolution parental-specific DNA and histone methylation maps uncover patterns of imprinting regulation in maize.

Zhang M, Xie S, Dong X, Zhao X, Zeng B, Chen J, Li H, Yang W, Zhao H, Wang G, Chen Z, Sun S, Hauck A, Jin W, Lai J.

Genome Res. 2014 Jan;24(1):167-76. doi: 10.1101/gr.155879.113. Epub 2013 Oct 16.

PMID:
24131563
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Production and processing of siRNA precursor transcripts from the highly repetitive maize genome.

Hale CJ, Erhard KF Jr, Lisch D, Hollick JB.

PLoS Genet. 2009 Aug;5(8):e1000598. doi: 10.1371/journal.pgen.1000598. Epub 2009 Aug 14.

PMID:
19680464
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Maize genome sequencing by methylation filtration.

Palmer LE, Rabinowicz PD, O'Shaughnessy AL, Balija VS, Nascimento LU, Dike S, de la Bastide M, Martienssen RA, McCombie WR.

Science. 2003 Dec 19;302(5653):2115-7.

PMID:
14684820
[PubMed - indexed for MEDLINE]
Free Article
18.

A mutation that prevents paramutation in maize also reverses Mutator transposon methylation and silencing.

Lisch D, Carey CC, Dorweiler JE, Chandler VL.

Proc Natl Acad Sci U S A. 2002 Apr 30;99(9):6130-5. Epub 2002 Apr 16.

PMID:
11959901
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Mutator transposon activation after UV-B involves chromatin remodeling.

Qüesta JI, Walbot V, Casati P.

Epigenetics. 2010 May 16;5(4):352-63. Epub 2010 May 10.

PMID:
20421734
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Genome-wide demethylation of Arabidopsis endosperm.

Hsieh TF, Ibarra CA, Silva P, Zemach A, Eshed-Williams L, Fischer RL, Zilberman D.

Science. 2009 Jun 12;324(5933):1451-4. doi: 10.1126/science.1172417.

PMID:
19520962
[PubMed - indexed for MEDLINE]
Free PMC Article

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