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Results: 1 to 20 of 116

1.

Genome-wide detection of condition-sensitive alternative splicing in Arabidopsis roots.

Li W, Lin WD, Ray P, Lan P, Schmidt W.

Plant Physiol. 2013 Jul;162(3):1750-63. doi: 10.1104/pp.113.217778. Epub 2013 Jun 4.

PMID:
23735510
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Expression changes of ribosomal proteins in phosphate- and iron-deficient Arabidopsis roots predict stress-specific alterations in ribosome composition.

Wang J, Lan P, Gao H, Zheng L, Li W, Schmidt W.

BMC Genomics. 2013 Nov 13;14:783. doi: 10.1186/1471-2164-14-783.

PMID:
24225185
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

iTRAQ protein profile analysis of Arabidopsis roots reveals new aspects critical for iron homeostasis.

Lan P, Li W, Wen TN, Shiau JY, Wu YC, Lin W, Schmidt W.

Plant Physiol. 2011 Feb;155(2):821-34. doi: 10.1104/pp.110.169508. Epub 2010 Dec 20.

PMID:
21173025
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Transcriptome analysis by GeneTrail revealed regulation of functional categories in response to alterations of iron homeostasis in Arabidopsis thaliana.

Schuler M, Keller A, Backes C, Philippar K, Lenhof HP, Bauer P.

BMC Plant Biol. 2011 May 18;11:87. doi: 10.1186/1471-2229-11-87.

PMID:
21592396
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Use of natural variation reveals core genes in the transcriptome of iron-deficient Arabidopsis thaliana roots.

Stein RJ, Waters BM.

J Exp Bot. 2012 Jan;63(2):1039-55. doi: 10.1093/jxb/err343. Epub 2011 Oct 30.

PMID:
22039296
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Genome-wide mapping of alternative splicing in Arabidopsis thaliana.

Filichkin SA, Priest HD, Givan SA, Shen R, Bryant DW, Fox SE, Wong WK, Mockler TC.

Genome Res. 2010 Jan;20(1):45-58. doi: 10.1101/gr.093302.109. Epub 2009 Oct 26.

PMID:
19858364
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Members of a small family of nodulin-like genes are regulated under iron deficiency in roots of Arabidopsis thaliana.

Gollhofer J, Schläwicke C, Jungnick N, Schmidt W, Buckhout TJ.

Plant Physiol Biochem. 2011 May;49(5):557-64. doi: 10.1016/j.plaphy.2011.02.011. Epub 2011 Feb 24.

PMID:
21411332
[PubMed - indexed for MEDLINE]
8.

Loss of function of Arabidopsis C-terminal domain phosphatase-like1 activates iron deficiency responses at the transcriptional level.

Aksoy E, Jeong IS, Koiwa H.

Plant Physiol. 2013 Jan;161(1):330-45. doi: 10.1104/pp.112.207043. Epub 2012 Nov 9.

PMID:
23144187
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Alternative splicing at NAGNAG acceptors in Arabidopsis thaliana SR and SR-related protein-coding genes.

Schindler S, Szafranski K, Hiller M, Ali GS, Palusa SG, Backofen R, Platzer M, Reddy AS.

BMC Genomics. 2008 Apr 10;9:159. doi: 10.1186/1471-2164-9-159.

PMID:
18402682
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Early iron-deficiency-induced transcriptional changes in Arabidopsis roots as revealed by microarray analyses.

Buckhout TJ, Yang TJ, Schmidt W.

BMC Genomics. 2009 Apr 6;10:147. doi: 10.1186/1471-2164-10-147.

PMID:
19348669
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Posttranslational regulation of the iron deficiency basic helix-loop-helix transcription factor FIT is affected by iron and nitric oxide.

Meiser J, Lingam S, Bauer P.

Plant Physiol. 2011 Dec;157(4):2154-66. doi: 10.1104/pp.111.183285. Epub 2011 Oct 4.

PMID:
21972265
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Transcriptome sequencing identifies SPL7-regulated copper acquisition genes FRO4/FRO5 and the copper dependence of iron homeostasis in Arabidopsis.

Bernal M, Casero D, Singh V, Wilson GT, Grande A, Yang H, Dodani SC, Pellegrini M, Huijser P, Connolly EL, Merchant SS, Krämer U.

Plant Cell. 2012 Feb;24(2):738-61. doi: 10.1105/tpc.111.090431. Epub 2012 Feb 28.

PMID:
22374396
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Rosette iron deficiency transcript and microRNA profiling reveals links between copper and iron homeostasis in Arabidopsis thaliana.

Waters BM, McInturf SA, Stein RJ.

J Exp Bot. 2012 Oct;63(16):5903-18. doi: 10.1093/jxb/ers239. Epub 2012 Sep 7.

PMID:
22962679
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The enigma of eIF5A in the iron deficiency response of Arabidopsis.

Lan P, Schmidt W.

Plant Signal Behav. 2011 Apr;6(4):528-30. Epub 2011 Apr 1.

PMID:
21383540
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Unproductive alternative splicing and nonsense mRNAs: a widespread phenomenon among plant circadian clock genes.

Filichkin SA, Mockler TC.

Biol Direct. 2012 Jul 2;7:20. doi: 10.1186/1745-6150-7-20.

PMID:
22747664
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Shoot to root communication is necessary to control the expression of iron-acquisition genes in Strategy I plants.

García MJ, Romera FJ, Stacey MG, Stacey G, Villar E, Alcántara E, Pérez-Vicente R.

Planta. 2013 Jan;237(1):65-75. doi: 10.1007/s00425-012-1757-0. Epub 2012 Sep 15.

PMID:
22983673
[PubMed - indexed for MEDLINE]
17.

Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis.

Marquez Y, Brown JW, Simpson C, Barta A, Kalyna M.

Genome Res. 2012 Jun;22(6):1184-95. doi: 10.1101/gr.134106.111. Epub 2012 Mar 5.

PMID:
22391557
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Mining Arabidopsis thaliana RNA-seq data with Integrated Genome Browser reveals stress-induced alternative splicing of the putative splicing regulator SR45a.

Gulledge AA, Roberts AD, Vora H, Patel K, Loraine AE.

Am J Bot. 2012 Feb;99(2):219-31. doi: 10.3732/ajb.1100355. Epub 2012 Jan 30.

PMID:
22291167
[PubMed - indexed for MEDLINE]
Free Article
19.

RNA-seq of Arabidopsis pollen uncovers novel transcription and alternative splicing.

Loraine AE, McCormick S, Estrada A, Patel K, Qin P.

Plant Physiol. 2013 Jun;162(2):1092-109. doi: 10.1104/pp.112.211441. Epub 2013 Apr 16.

PMID:
23590974
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Extensive divergence in alternative splicing patterns after gene and genome duplication during the evolutionary history of Arabidopsis.

Zhang PG, Huang SZ, Pin AL, Adams KL.

Mol Biol Evol. 2010 Jul;27(7):1686-97. doi: 10.1093/molbev/msq054. Epub 2010 Feb 25.

PMID:
20185454
[PubMed - indexed for MEDLINE]
Free Article

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