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Results: 1 to 20 of 106

1.

COPRED: prediction of fold, GO molecular function and functional residues at the domain level.

López D, Pazos F.

Bioinformatics. 2013 Jul 15;29(14):1811-2. doi: 10.1093/bioinformatics/btt283. Epub 2013 May 29.

PMID:
23720488
[PubMed - indexed for MEDLINE]
2.

Studying the co-evolution of protein families with the Mirrortree web server.

Ochoa D, Pazos F.

Bioinformatics. 2010 May 15;26(10):1370-1. doi: 10.1093/bioinformatics/btq137. Epub 2010 Mar 30.

PMID:
20363731
[PubMed - indexed for MEDLINE]
Free Article
3.

Concomitant prediction of function and fold at the domain level with GO-based profiles.

Lopez D, Pazos F.

BMC Bioinformatics. 2013;14 Suppl 3:S12. doi: 10.1186/1471-2105-14-S3-S12. Epub 2013 Feb 28.

PMID:
23514233
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

WS-SNPs&GO: a web server for predicting the deleterious effect of human protein variants using functional annotation.

Capriotti E, Calabrese R, Fariselli P, Martelli PL, Altman RB, Casadio R.

BMC Genomics. 2013;14 Suppl 3:S6. doi: 10.1186/1471-2164-14-S3-S6. Epub 2013 May 28.

PMID:
23819482
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

MESSA: MEta-Server for protein Sequence Analysis.

Cong Q, Grishin NV.

BMC Biol. 2012 Oct 2;10:82. doi: 10.1186/1741-7007-10-82.

PMID:
23031578
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Efficient recognition of folds in protein 3D structures by the improved PRIDE algorithm.

Gáspári Z, Vlahovicek K, Pongor S.

Bioinformatics. 2005 Aug 1;21(15):3322-3. Epub 2005 May 24.

PMID:
15914542
[PubMed - indexed for MEDLINE]
Free Article
7.

A domain-centric solution to functional genomics via dcGO Predictor.

Fang H, Gough J.

BMC Bioinformatics. 2013;14 Suppl 3:S9. doi: 10.1186/1471-2105-14-S3-S9. Epub 2013 Feb 28.

PMID:
23514627
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D.

Porollo A, Meller J.

BMC Bioinformatics. 2007 Aug 29;8:316.

PMID:
17727718
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

INTREPID: a web server for prediction of functionally important residues by evolutionary analysis.

Sankararaman S, Kolaczkowski B, Sjölander K.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W390-5. doi: 10.1093/nar/gkp339. Epub 2009 May 13.

PMID:
19443452
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Meta-DP: domain prediction meta-server.

Saini HK, Fischer D.

Bioinformatics. 2005 Jun 15;21(12):2917-20. Epub 2005 Apr 19.

PMID:
15840708
[PubMed - indexed for MEDLINE]
Free Article
11.

iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions.

Finn RD, Marshall M, Bateman A.

Bioinformatics. 2005 Feb 1;21(3):410-2. Epub 2004 Sep 7.

PMID:
15353450
[PubMed - indexed for MEDLINE]
Free Article
12.

FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins.

Roche DB, Tetchner SJ, McGuffin LJ.

BMC Bioinformatics. 2011 May 16;12:160. doi: 10.1186/1471-2105-12-160.

PMID:
21575183
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

SNP@Domain: a web resource of single nucleotide polymorphisms (SNPs) within protein domain structures and sequences.

Han A, Kang HJ, Cho Y, Lee S, Kim YJ, Gong S.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W642-4.

PMID:
16845090
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

PSiFR: an integrated resource for prediction of protein structure and function.

Pandit SB, Brylinski M, Zhou H, Gao M, Arakaki AK, Skolnick J.

Bioinformatics. 2010 Mar 1;26(5):687-8. doi: 10.1093/bioinformatics/btq006. Epub 2010 Jan 14.

PMID:
20080513
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

MBRole: enrichment analysis of metabolomic data.

Chagoyen M, Pazos F.

Bioinformatics. 2011 Mar 1;27(5):730-1. doi: 10.1093/bioinformatics/btr001. Epub 2011 Jan 5.

PMID:
21208985
[PubMed - indexed for MEDLINE]
Free Article
16.

WSsas: a web service for the annotation of functional residues through structural homologues.

Talavera D, Laskowski RA, Thornton JM.

Bioinformatics. 2009 May 1;25(9):1192-4. doi: 10.1093/bioinformatics/btp116. Epub 2009 Feb 27.

PMID:
19251774
[PubMed - indexed for MEDLINE]
Free Article
17.

META-PP: single interface to crucial prediction servers.

Eyrich VA, Rost B.

Nucleic Acids Res. 2003 Jul 1;31(13):3308-10.

PMID:
12824314
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

ProSAT2--Protein Structure Annotation Server.

Gabdoulline RR, Ulbrich S, Richter S, Wade RC.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W79-83.

PMID:
16845114
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

PocketAnnotate: towards site-based function annotation.

Anand P, Yeturu K, Chandra N.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W400-8. doi: 10.1093/nar/gks421. Epub 2012 May 22.

PMID:
22618878
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

GOAnno: GO annotation based on multiple alignment.

Chalmel F, Lardenois A, Thompson JD, Muller J, Sahel JA, Léveillard T, Poch O.

Bioinformatics. 2005 May 1;21(9):2095-6. Epub 2005 Jan 12.

PMID:
15647299
[PubMed - indexed for MEDLINE]
Free Article

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