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Items: 1 to 20 of 108

1.

COPRED: prediction of fold, GO molecular function and functional residues at the domain level.

López D, Pazos F.

Bioinformatics. 2013 Jul 15;29(14):1811-2. doi: 10.1093/bioinformatics/btt283. Epub 2013 May 29.

2.

Studying the co-evolution of protein families with the Mirrortree web server.

Ochoa D, Pazos F.

Bioinformatics. 2010 May 15;26(10):1370-1. doi: 10.1093/bioinformatics/btq137. Epub 2010 Mar 30.

3.

Concomitant prediction of function and fold at the domain level with GO-based profiles.

Lopez D, Pazos F.

BMC Bioinformatics. 2013;14 Suppl 3:S12. doi: 10.1186/1471-2105-14-S3-S12. Epub 2013 Feb 28.

4.

CATH FunFHMMer web server: protein functional annotations using functional family assignments.

Das S, Sillitoe I, Lee D, Lees JG, Dawson NL, Ward J, Orengo CA.

Nucleic Acids Res. 2015 Jul 1;43(W1):W148-53. doi: 10.1093/nar/gkv488. Epub 2015 May 11.

5.

WS-SNPs&GO: a web server for predicting the deleterious effect of human protein variants using functional annotation.

Capriotti E, Calabrese R, Fariselli P, Martelli PL, Altman RB, Casadio R.

BMC Genomics. 2013;14 Suppl 3:S6. doi: 10.1186/1471-2164-14-S3-S6. Epub 2013 May 28.

6.

MESSA: MEta-Server for protein Sequence Analysis.

Cong Q, Grishin NV.

BMC Biol. 2012 Oct 2;10:82. doi: 10.1186/1741-7007-10-82.

7.

Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data.

Lohse M, Nagel A, Herter T, May P, Schroda M, Zrenner R, Tohge T, Fernie AR, Stitt M, Usadel B.

Plant Cell Environ. 2014 May;37(5):1250-8. doi: 10.1111/pce.12231. Epub 2013 Dec 17.

PMID:
24237261
8.

INGA: protein function prediction combining interaction networks, domain assignments and sequence similarity.

Piovesan D, Giollo M, Leonardi E, Ferrari C, Tosatto SC.

Nucleic Acids Res. 2015 Jul 1;43(W1):W134-40. doi: 10.1093/nar/gkv523. Epub 2015 May 27.

9.

Efficient recognition of folds in protein 3D structures by the improved PRIDE algorithm.

Gáspári Z, Vlahovicek K, Pongor S.

Bioinformatics. 2005 Aug 1;21(15):3322-3. Epub 2005 May 24.

10.

A domain-centric solution to functional genomics via dcGO Predictor.

Fang H, Gough J.

BMC Bioinformatics. 2013;14 Suppl 3:S9. doi: 10.1186/1471-2105-14-S3-S9. Epub 2013 Feb 28.

11.
12.

INTREPID: a web server for prediction of functionally important residues by evolutionary analysis.

Sankararaman S, Kolaczkowski B, Sjölander K.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W390-5. doi: 10.1093/nar/gkp339. Epub 2009 May 13.

13.

Meta-DP: domain prediction meta-server.

Saini HK, Fischer D.

Bioinformatics. 2005 Jun 15;21(12):2917-20. Epub 2005 Apr 19.

14.

The GOA database: gene Ontology annotation updates for 2015.

Huntley RP, Sawford T, Mutowo-Meullenet P, Shypitsyna A, Bonilla C, Martin MJ, O'Donovan C.

Nucleic Acids Res. 2015 Jan;43(Database issue):D1057-63. doi: 10.1093/nar/gku1113. Epub 2014 Nov 6.

15.

iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions.

Finn RD, Marshall M, Bateman A.

Bioinformatics. 2005 Feb 1;21(3):410-2. Epub 2004 Sep 7.

16.

FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins.

Roche DB, Tetchner SJ, McGuffin LJ.

BMC Bioinformatics. 2011 May 16;12:160. doi: 10.1186/1471-2105-12-160.

17.

SNP@Domain: a web resource of single nucleotide polymorphisms (SNPs) within protein domain structures and sequences.

Han A, Kang HJ, Cho Y, Lee S, Kim YJ, Gong S.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W642-4.

18.

MBRole: enrichment analysis of metabolomic data.

Chagoyen M, Pazos F.

Bioinformatics. 2011 Mar 1;27(5):730-1. doi: 10.1093/bioinformatics/btr001. Epub 2011 Jan 5.

19.

FuncPatch: a web server for the fast Bayesian inference of conserved functional patches in protein 3D structures.

Huang YF, Golding GB.

Bioinformatics. 2015 Feb 15;31(4):523-31. doi: 10.1093/bioinformatics/btu673. Epub 2014 Oct 15.

PMID:
25322839
20.

META-PP: single interface to crucial prediction servers.

Eyrich VA, Rost B.

Nucleic Acids Res. 2003 Jul 1;31(13):3308-10.

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