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Results: 1 to 20 of 103

1.

Imputation-based meta-analysis of severe malaria in three African populations.

Band G, Le QS, Jostins L, Pirinen M, Kivinen K, Jallow M, Sisay-Joof F, Bojang K, Pinder M, Sirugo G, Conway DJ, Nyirongo V, Kachala D, Molyneux M, Taylor T, Ndila C, Peshu N, Marsh K, Williams TN, Alcock D, Andrews R, Edkins S, Gray E, Hubbart C, Jeffreys A, Rowlands K, Schuldt K, Clark TG, Small KS, Teo YY, Kwiatkowski DP, Rockett KA, Barrett JC, Spencer CC; Malaria Genomic Epidemiology Network.

PLoS Genet. 2013 May;9(5):e1003509. doi: 10.1371/journal.pgen.1003509. Epub 2013 May 23. Erratum in: PLoS Genet. 2013 Jun;9(6). doi:10.1371/annotation/adc2beaf-4bee-4e22-925b-6788d62fe029. Malaria Genomic Epidemiological Network [corrected to Malaria Genomic Epidemiology Network].

PMID:
23717212
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Genome-wide and fine-resolution association analysis of malaria in West Africa.

Jallow M, Teo YY, Small KS, Rockett KA, Deloukas P, Clark TG, Kivinen K, Bojang KA, Conway DJ, Pinder M, Sirugo G, Sisay-Joof F, Usen S, Auburn S, Bumpstead SJ, Campino S, Coffey A, Dunham A, Fry AE, Green A, Gwilliam R, Hunt SE, Inouye M, Jeffreys AE, Mendy A, Palotie A, Potter S, Ragoussis J, Rogers J, Rowlands K, Somaskantharajah E, Whittaker P, Widden C, Donnelly P, Howie B, Marchini J, Morris A, SanJoaquin M, Achidi EA, Agbenyega T, Allen A, Amodu O, Corran P, Djimde A, Dolo A, Doumbo OK, Drakeley C, Dunstan S, Evans J, Farrar J, Fernando D, Hien TT, Horstmann RD, Ibrahim M, Karunaweera N, Kokwaro G, Koram KA, Lemnge M, Makani J, Marsh K, Michon P, Modiano D, Molyneux ME, Mueller I, Parker M, Peshu N, Plowe CV, Puijalon O, Reeder J, Reyburn H, Riley EM, Sakuntabhai A, Singhasivanon P, Sirima S, Tall A, Taylor TE, Thera M, Troye-Blomberg M, Williams TN, Wilson M, Kwiatkowski DP; Wellcome Trust Case Control Consortium; Malaria Genomic Epidemiology Network.

Nat Genet. 2009 Jun;41(6):657-65. doi: 10.1038/ng.388. Epub 2009 May 24.

PMID:
19465909
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Methodological challenges of genome-wide association analysis in Africa.

Teo YY, Small KS, Kwiatkowski DP.

Nat Rev Genet. 2010 Feb;11(2):149-60. doi: 10.1038/nrg2731. Review.

PMID:
20084087
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Haplotype variation and genotype imputation in African populations.

Huang L, Jakobsson M, Pemberton TJ, Ibrahim M, Nyambo T, Omar S, Pritchard JK, Tishkoff SA, Rosenberg NA.

Genet Epidemiol. 2011 Dec;35(8):766-80. doi: 10.1002/gepi.20626.

PMID:
22125220
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Patterns of nucleotide and haplotype diversity at ICAM-1 across global human populations with varying levels of malaria exposure.

Gomez F, Tomas G, Ko WY, Ranciaro A, Froment A, Ibrahim M, Lema G, Nyambo TB, Omar SA, Wambebe C, Hirbo JB, Rocha J, Tishkoff SA.

Hum Genet. 2013 Sep;132(9):987-99. doi: 10.1007/s00439-013-1284-5. Epub 2013 Apr 23.

PMID:
23609612
[PubMed - indexed for MEDLINE]
6.

The structure of haplotype blocks in the human genome.

Gabriel SB, Schaffner SF, Nguyen H, Moore JM, Roy J, Blumenstiel B, Higgins J, DeFelice M, Lochner A, Faggart M, Liu-Cordero SN, Rotimi C, Adeyemo A, Cooper R, Ward R, Lander ES, Daly MJ, Altshuler D.

Science. 2002 Jun 21;296(5576):2225-9. Epub 2002 May 23.

PMID:
12029063
[PubMed - indexed for MEDLINE]
Free Article
7.

Genotype-imputation accuracy across worldwide human populations.

Huang L, Li Y, Singleton AB, Hardy JA, Abecasis G, Rosenberg NA, Scheet P.

Am J Hum Genet. 2009 Feb;84(2):235-50. doi: 10.1016/j.ajhg.2009.01.013.

PMID:
19215730
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Positive selection of a CD36 nonsense variant in sub-Saharan Africa, but no association with severe malaria phenotypes.

Fry AE, Ghansa A, Small KS, Palma A, Auburn S, Diakite M, Green A, Campino S, Teo YY, Clark TG, Jeffreys AE, Wilson J, Jallow M, Sisay-Joof F, Pinder M, Griffiths MJ, Peshu N, Williams TN, Newton CR, Marsh K, Molyneux ME, Taylor TE, Koram KA, Oduro AR, Rogers WO, Rockett KA, Sabeti PC, Kwiatkowski DP.

Hum Mol Genet. 2009 Jul 15;18(14):2683-92. doi: 10.1093/hmg/ddp192. Epub 2009 Apr 29.

PMID:
19403559
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Enhanced statistical tests for GWAS in admixed populations: assessment using African Americans from CARe and a Breast Cancer Consortium.

Pasaniuc B, Zaitlen N, Lettre G, Chen GK, Tandon A, Kao WH, Ruczinski I, Fornage M, Siscovick DS, Zhu X, Larkin E, Lange LA, Cupples LA, Yang Q, Akylbekova EL, Musani SK, Divers J, Mychaleckyj J, Li M, Papanicolaou GJ, Millikan RC, Ambrosone CB, John EM, Bernstein L, Zheng W, Hu JJ, Ziegler RG, Nyante SJ, Bandera EV, Ingles SA, Press MF, Chanock SJ, Deming SL, Rodriguez-Gil JL, Palmer CD, Buxbaum S, Ekunwe L, Hirschhorn JN, Henderson BE, Myers S, Haiman CA, Reich D, Patterson N, Wilson JG, Price AL.

PLoS Genet. 2011 Apr;7(4):e1001371. doi: 10.1371/journal.pgen.1001371. Epub 2011 Apr 21.

PMID:
21541012
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A generic coalescent-based framework for the selection of a reference panel for imputation.

Paşaniuc B, Avinery R, Gur T, Skibola CF, Bracci PM, Halperin E.

Genet Epidemiol. 2010 Dec;34(8):773-82. doi: 10.1002/gepi.20505.

PMID:
21058333
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Worldwide distribution of the MYH9 kidney disease susceptibility alleles and haplotypes: evidence of historical selection in Africa.

Oleksyk TK, Nelson GW, An P, Kopp JB, Winkler CA.

PLoS One. 2010 Jul 9;5(7):e11474. doi: 10.1371/journal.pone.0011474.

PMID:
20634883
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Similarity in recombination rate and linkage disequilibrium at CYP2C and CYP2D cytochrome P450 gene regions among Europeans indicates signs of selection and no advantage of using tagSNPs in population isolates.

Pimenoff VN, Laval G, Comas D, Palo JU, Gut I, Cann H, Excoffier L, Sajantila A.

Pharmacogenet Genomics. 2012 Dec;22(12):846-57. doi: 10.1097/FPC.0b013e32835a3a6d.

PMID:
23089684
[PubMed - indexed for MEDLINE]
13.

The relationship between imputation error and statistical power in genetic association studies in diverse populations.

Huang L, Wang C, Rosenberg NA.

Am J Hum Genet. 2009 Nov;85(5):692-8. doi: 10.1016/j.ajhg.2009.09.017. Epub 2009 Oct 22.

PMID:
19853241
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Type 2 diabetes risk alleles demonstrate extreme directional differentiation among human populations, compared to other diseases.

Chen R, Corona E, Sikora M, Dudley JT, Morgan AA, Moreno-Estrada A, Nilsen GB, Ruau D, Lincoln SE, Bustamante CD, Butte AJ.

PLoS Genet. 2012;8(4):e1002621. doi: 10.1371/journal.pgen.1002621. Epub 2012 Apr 12.

PMID:
22511877
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Investigation of malaria susceptibility determinants in the IFNG/IL26/IL22 genomic region.

Koch O, Rockett K, Jallow M, Pinder M, Sisay-Joof F, Kwiatkowski D.

Genes Immun. 2005 Jun;6(4):312-8.

PMID:
15858598
[PubMed - indexed for MEDLINE]
16.

Design considerations for genetic linkage and association studies.

Nsengimana J, Bishop DT.

Methods Mol Biol. 2012;850:237-62. doi: 10.1007/978-1-61779-555-8_13.

PMID:
22307702
[PubMed - indexed for MEDLINE]
17.

Linkage disequilibrium sharing and haplotype-tagged SNP portability between populations.

Huang W, He Y, Wang H, Wang Y, Liu Y, Wang Y, Chu X, Wang Y, Xu L, Shen Y, Xiong X, Li H, Wen B, Qian J, Yuan W, Zhang C, Wang Y, Jiang H, Zhao G, Chen Z, Jin L.

Proc Natl Acad Sci U S A. 2006 Jan 31;103(5):1418-21. Epub 2006 Jan 23.

PMID:
16432195
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

ATRIUM: testing untyped SNPs in case-control association studies with related individuals.

Wang Z, McPeek MS.

Am J Hum Genet. 2009 Nov;85(5):667-78. doi: 10.1016/j.ajhg.2009.10.006.

PMID:
19913122
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Evaluation of imputation-based association in and around the integrin-alpha-M (ITGAM) gene and replication of robust association between a non-synonymous functional variant within ITGAM and systemic lupus erythematosus (SLE).

Han S, Kim-Howard X, Deshmukh H, Kamatani Y, Viswanathan P, Guthridge JM, Thomas K, Kaufman KM, Ojwang J, Rojas-Villarraga A, Baca V, Orozco L, Rhodes B, Choi CB, Gregersen PK, Merrill JT, James JA, Gaffney PM, Moser KL, Jacob CO, Kimberly RP, Harley JB, Bae SC, Anaya JM, Alarcón-Riquelme ME, Matsuda K, Vyse TJ, Nath SK.

Hum Mol Genet. 2009 Mar 15;18(6):1171-80. doi: 10.1093/hmg/ddp007. Epub 2009 Jan 6.

PMID:
19129174
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Accounting for linkage disequilibrium in association analysis of diverse populations.

Charles BA, Shriner D, Rotimi CN.

Genet Epidemiol. 2014 Apr;38(3):265-73. doi: 10.1002/gepi.21788. Epub 2014 Jan 26. Review.

PMID:
24464495
[PubMed - indexed for MEDLINE]

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