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Short-term genome stability of serial Clostridium difficile ribotype 027 isolates in an experimental gut model and recurrent human disease.

Eyre DW, Walker AS, Freeman J, Baines SD, Fawley WN, Chilton CH, Griffiths D, Vaughan A, Crook DW, Peto TE, Wilcox MH.

PLoS One. 2013 May 15;8(5):e63540. doi: 10.1371/journal.pone.0063540. Print 2013.


Comparison of multilocus variable-number tandem-repeat analysis and whole-genome sequencing for investigation of Clostridium difficile transmission.

Eyre DW, Fawley WN, Best EL, Griffiths D, Stoesser NE, Crook DW, Peto TE, Walker AS, Wilcox MH.

J Clin Microbiol. 2013 Dec;51(12):4141-9. doi: 10.1128/JCM.01095-13. Epub 2013 Oct 9.


Diverse sources of C. difficile infection identified on whole-genome sequencing.

Eyre DW, Cule ML, Wilson DJ, Griffiths D, Vaughan A, O'Connor L, Ip CL, Golubchik T, Batty EM, Finney JM, Wyllie DH, Didelot X, Piazza P, Bowden R, Dingle KE, Harding RM, Crook DW, Wilcox MH, Peto TE, Walker AS.

N Engl J Med. 2013 Sep 26;369(13):1195-205. doi: 10.1056/NEJMoa1216064.


Whole-genome sequencing demonstrates that fidaxomicin is superior to vancomycin for preventing reinfection and relapse of infection with Clostridium difficile.

Eyre DW, Babakhani F, Griffiths D, Seddon J, Del Ojo Elias C, Gorbach SL, Peto TE, Crook DW, Walker AS.

J Infect Dis. 2014 May 1;209(9):1446-51. doi: 10.1093/infdis/jit598. Epub 2013 Nov 11.


Evaluation of linezolid for the treatment of Clostridium difficile infection caused by epidemic strains using an in vitro human gut model.

Baines SD, Noel AR, Huscroft GS, Todhunter SL, O'Connor R, Hobbs JK, Freeman J, Lovering AM, Wilcox MH.

J Antimicrob Chemother. 2011 Jul;66(7):1537-46. doi: 10.1093/jac/dkr155. Epub 2011 Apr 18.


Evaluation of antimicrobial activity of ceftaroline against Clostridium difficile and propensity to induce C. difficile infection in an in vitro human gut model.

Baines SD, Chilton CH, Crowther GS, Todhunter SL, Freeman J, Wilcox MH.

J Antimicrob Chemother. 2013 Aug;68(8):1842-9. doi: 10.1093/jac/dkt107. Epub 2013 Apr 3.


Analysis of a Clostridium difficile PCR ribotype 078 100 kilobase island reveals the presence of a novel transposon, Tn6164.

Corver J, Bakker D, Brouwer MS, Harmanus C, Hensgens MP, Roberts AP, Lipman LJ, Kuijper EJ, van Leeuwen HC.

BMC Microbiol. 2012 Jul 2;12:130. doi: 10.1186/1471-2180-12-130.


New opportunities for improved ribotyping of C. difficile clinical isolates by exploring their genomes.

Gürtler V, Grando D.

J Microbiol Methods. 2013 Jun;93(3):257-72. doi: 10.1016/j.mimet.2013.02.013. Epub 2013 Mar 29. Review.


Comparison of strain typing results for Clostridium difficile isolates from North America.

Tenover FC, Akerlund T, Gerding DN, Goering RV, Boström T, Jonsson AM, Wong E, Wortman AT, Persing DH.

J Clin Microbiol. 2011 May;49(5):1831-7. doi: 10.1128/JCM.02446-10. Epub 2011 Mar 9.


Fourteen-genome comparison identifies DNA markers for severe-disease-associated strains of Clostridium difficile.

Forgetta V, Oughton MT, Marquis P, Brukner I, Blanchette R, Haub K, Magrini V, Mardis ER, Gerding DN, Loo VG, Miller MA, Mulvey MR, Rupnik M, Dascal A, Dewar K.

J Clin Microbiol. 2011 Jun;49(6):2230-8. doi: 10.1128/JCM.00391-11. Epub 2011 Apr 20.


The interplay between microbiome dynamics and pathogen dynamics in a murine model of Clostridium difficile Infection.

Reeves AE, Theriot CM, Bergin IL, Huffnagle GB, Schloss PD, Young VB.

Gut Microbes. 2011 May-Jun;2(3):145-58. Epub 2011 May 1.


Diversity of cwp loci in clinical isolates of Clostridium difficile.

Biazzo M, Cioncada R, Fiaschi L, Tedde V, Spigaglia P, Mastrantonio P, Pizza M, Barocchi MA, Scarselli M, Galeotti CL.

J Med Microbiol. 2013 Sep;62(Pt 9):1444-52. doi: 10.1099/jmm.0.058719-0. Epub 2013 May 30.


An epidemic, toxin gene-variant strain of Clostridium difficile.

McDonald LC, Killgore GE, Thompson A, Owens RC Jr, Kazakova SV, Sambol SP, Johnson S, Gerding DN.

N Engl J Med. 2005 Dec 8;353(23):2433-41. Epub 2005 Dec 1.


Multidrug-resistant North American pulsotype 2 Clostridium difficile was the predominant toxigenic hospital-acquired strain in the province of Manitoba, Canada, in 2006-2007.

Karlowsky JA, Zhanel GG, Hammond GW, Rubinstein E, Wylie J, Du T, Mulvey MR, Alfa MJ.

J Med Microbiol. 2012 May;61(Pt 5):693-700. doi: 10.1099/jmm.0.041053-0. Epub 2012 Feb 2.


Comparison of two capillary gel electrophoresis systems for Clostridium difficile ribotyping, using a panel of ribotype 027 isolates and whole-genome sequences as a reference standard.

Xiao M, Kong F, Jin P, Wang Q, Xiao K, Jeoffreys N, James G, Gilbert GL.

J Clin Microbiol. 2012 Aug;50(8):2755-60. doi: 10.1128/JCM.00777-12. Epub 2012 Jun 12.


Whole-genome sequencing improves discrimination of relapse from reinfection and identifies transmission events among patients with recurrent Clostridium difficile infections.

Mac Aogáin M, Moloney G, Kilkenny S, Kelleher M, Kelleghan M, Boyle B, Rogers TR.

J Hosp Infect. 2015 Jun;90(2):108-16. doi: 10.1016/j.jhin.2015.01.021. Epub 2015 Feb 26.


Relapse versus reinfection: recurrent Clostridium difficile infection following treatment with fidaxomicin or vancomycin.

Figueroa I, Johnson S, Sambol SP, Goldstein EJ, Citron DM, Gerding DN.

Clin Infect Dis. 2012 Aug;55 Suppl 2:S104-9. doi: 10.1093/cid/cis357.


A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance.

Eyre DW, Golubchik T, Gordon NC, Bowden R, Piazza P, Batty EM, Ip CL, Wilson DJ, Didelot X, O'Connor L, Lay R, Buck D, Kearns AM, Shaw A, Paul J, Wilcox MH, Donnelly PJ, Peto TE, Walker AS, Crook DW.

BMJ Open. 2012 Jun 6;2(3). pii: e001124. doi: 10.1136/bmjopen-2012-001124. Print 2012.


Lack of association between clinical outcome of Clostridium difficile infections, strain type, and virulence-associated phenotypes.

Sirard S, Valiquette L, Fortier LC.

J Clin Microbiol. 2011 Dec;49(12):4040-6. doi: 10.1128/JCM.05053-11. Epub 2011 Sep 28.


Typing of Clostridium difficile isolates endemic in Japan by sequencing of slpA and its application to direct typing.

Kato H, Kato H, Ito Y, Akahane T, Izumida S, Yokoyama T, Kaji C, Arakawa Y.

J Med Microbiol. 2010 May;59(Pt 5):556-62. doi: 10.1099/jmm.0.016147-0. Epub 2010 Feb 4.

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