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From mouse to human: evolutionary genomics analysis of human orthologs of essential genes.

Georgi B, Voight BF, Bućan M.

PLoS Genet. 2013 May;9(5):e1003484. doi: 10.1371/journal.pgen.1003484. Epub 2013 May 9.


Evolutionary conservation and selection of human disease gene orthologs in the rat and mouse genomes.

Huang H, Winter EE, Wang H, Weinstock KG, Xing H, Goodstadt L, Stenson PD, Cooper DN, Smith D, Albà MM, Ponting CP, Fechtel K.

Genome Biol. 2004;5(7):R47. Epub 2004 Jun 28.


A map of human genome variation from population-scale sequencing.

1000 Genomes Project Consortium, Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA, Hurles ME, McVean GA.

Nature. 2010 Oct 28;467(7319):1061-73. doi: 10.1038/nature09534. Erratum in: Nature. 2011 May 26;473(7348):544. Xue, Yali [added]; Cartwright, Reed A [added]; Altshuler, David L [corrected to Altshuler, David]; Kebbel, Andrew [corrected to Keebler, Jonathan]; Koko-Gonzales, Paula [corrected to Kokko-Gonzales, Paula]; Nickerson, Debbie A [corrected to Nickerson, Deborah A].


Population genomic analysis of model and nonmodel organisms using sequenced RAD tags.

Hohenlohe PA, Catchen J, Cresko WA.

Methods Mol Biol. 2012;888:235-60. doi: 10.1007/978-1-61779-870-2_14.


Improving the specificity of high-throughput ortholog prediction.

Fulton DL, Li YY, Laird MR, Horsman BG, Roche FM, Brinkman FS.

BMC Bioinformatics. 2006 May 28;7:270.


Comparative genomics of Mycoplasma: analysis of conserved essential genes and diversity of the pan-genome.

Liu W, Fang L, Li M, Li S, Guo S, Luo R, Feng Z, Li B, Zhou Z, Shao G, Chen H, Xiao S.

PLoS One. 2012;7(4):e35698. doi: 10.1371/journal.pone.0035698. Epub 2012 Apr 20.


[From population genetics to population genomics of forest trees: integrated population genomics approach].

Krutovskiĭ KV.

Genetika. 2006 Oct;42(10):1304-18. Review. Russian.


Identification of genetic risk variants for deep vein thrombosis by multiplexed next-generation sequencing of 186 hemostatic/pro-inflammatory genes.

Lotta LA, Wang M, Yu J, Martinelli I, Yu F, Passamonti SM, Consonni D, Pappalardo E, Menegatti M, Scherer SE, Lewis LL, Akbar H, Wu Y, Bainbridge MN, Muzny DM, Mannucci PM, Gibbs RA, Peyvandi F.

BMC Med Genomics. 2012 Feb 21;5:7. doi: 10.1186/1755-8794-5-7.


A genomic scale map of genetic diversity in Trypanosoma cruzi.

Ackermann AA, Panunzi LG, Cosentino RO, Sánchez DO, Agüero F.

BMC Genomics. 2012 Dec 27;13:736. doi: 10.1186/1471-2164-13-736.


Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes.

Goode DL, Cooper GM, Schmutz J, Dickson M, Gonzales E, Tsai M, Karra K, Davydov E, Batzoglou S, Myers RM, Sidow A.

Genome Res. 2010 Mar;20(3):301-10. doi: 10.1101/gr.102210.109. Epub 2010 Jan 12.


Heart transcriptome of the bank vole (Myodes glareolus): towards understanding the evolutionary variation in metabolic rate.

Babik W, Stuglik M, Qi W, Kuenzli M, Kuduk K, Koteja P, Radwan J.

BMC Genomics. 2010 Jun 21;11:390. doi: 10.1186/1471-2164-11-390.


Null mutations in human and mouse orthologs frequently result in different phenotypes.

Liao BY, Zhang J.

Proc Natl Acad Sci U S A. 2008 May 13;105(19):6987-92. doi: 10.1073/pnas.0800387105. Epub 2008 May 5.


Evolution and functional impact of rare coding variation from deep sequencing of human exomes.

Tennessen JA, Bigham AW, O'Connor TD, Fu W, Kenny EE, Gravel S, McGee S, Do R, Liu X, Jun G, Kang HM, Jordan D, Leal SM, Gabriel S, Rieder MJ, Abecasis G, Altshuler D, Nickerson DA, Boerwinkle E, Sunyaev S, Bustamante CD, Bamshad MJ, Akey JM; Broad GO; Seattle GO; NHLBI Exome Sequencing Project.

Science. 2012 Jul 6;337(6090):64-9. doi: 10.1126/science.1219240. Epub 2012 May 17.


Needles in stacks of needles: finding disease-causal variants in a wealth of genomic data.

Cooper GM, Shendure J.

Nat Rev Genet. 2011 Aug 18;12(9):628-40. doi: 10.1038/nrg3046. Review.


Evolutionary, structural and functional relationships revealed by comparative analysis of syntenic genes in Rhizobiales.

Guerrero G, Peralta H, Aguilar A, Díaz R, Villalobos MA, Medrano-Soto A, Mora J.

BMC Evol Biol. 2005 Oct 17;5:55.


Evolutionary interrogation of human biology in well-annotated genomic framework of rhesus macaque.

Zhang SJ, Liu CJ, Yu P, Zhong X, Chen JY, Yang X, Peng J, Yan S, Wang C, Zhu X, Xiong J, Zhang YE, Tan BC, Li CY.

Mol Biol Evol. 2014 May;31(5):1309-24. doi: 10.1093/molbev/msu084. Epub 2014 Feb 27.


Huvariome: a web server resource of whole genome next-generation sequencing allelic frequencies to aid in pathological candidate gene selection.

Stubbs A, McClellan EA, Horsman S, Hiltemann SD, Palli I, Nouwens S, Koning AH, Hoogland F, Reumers J, Heijsman D, Swagemakers S, Kremer A, Meijerink J, Lambrechts D, van der Spek PJ.

J Clin Bioinforma. 2012 Nov 19;2(1):19. doi: 10.1186/2043-9113-2-19.


The humankind genome: from genetic diversity to the origin of human diseases.

Belizário JE.

Genome. 2013 Dec;56(12):705-16. doi: 10.1139/gen-2013-0125. Review.


Characterizing natural variation using next-generation sequencing technologies.

Gilad Y, Pritchard JK, Thornton K.

Trends Genet. 2009 Oct;25(10):463-71. doi: 10.1016/j.tig.2009.09.003. Epub 2009 Oct 2. Review.

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