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Results: 1 to 20 of 84

1.

[Single nucleotide polymorphisms (SNPs): functional implications of regulatory-SNP (rSNP) and structural RNA (srSNPs) in complex diseases].

Ramírez-Bello J, Vargas-Alarcón G, Tovilla-Zárate C, Fragoso JM.

Gac Med Mex. 2013 Mar-Apr;149(2):220-8. Review. Spanish.

PMID:
23652189
[PubMed - indexed for MEDLINE]
2.

Polymorphisms affecting gene transcription and mRNA processing in pharmacogenetic candidate genes: detection through allelic expression imbalance in human target tissues.

Johnson AD, Zhang Y, Papp AC, Pinsonneault JK, Lim JE, Saffen D, Dai Z, Wang D, Sadée W.

Pharmacogenet Genomics. 2008 Sep;18(9):781-91. doi: 10.1097/FPC.0b013e3283050107.

PMID:
18698231
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

is-rSNP: a novel technique for in silico regulatory SNP detection.

Macintyre G, Bailey J, Haviv I, Kowalczyk A.

Bioinformatics. 2010 Sep 15;26(18):i524-30. doi: 10.1093/bioinformatics/btq378.

PMID:
20823317
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Pharmacogenomics of the RNA world: structural RNA polymorphisms in drug therapy.

Sadee W, Wang D, Papp AC, Pinsonneault JK, Smith RM, Moyer RA, Johnson AD.

Clin Pharmacol Ther. 2011 Mar;89(3):355-65. doi: 10.1038/clpt.2010.314. Epub 2011 Feb 2. Review.

PMID:
21289622
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Discovery and verification of functional single nucleotide polymorphisms in regulatory genomic regions: current and developing technologies.

Chorley BN, Wang X, Campbell MR, Pittman GS, Noureddine MA, Bell DA.

Mutat Res. 2008 Jul-Aug;659(1-2):147-57. doi: 10.1016/j.mrrev.2008.05.001. Epub 2008 May 4. Review.

PMID:
18565787
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Large-scale computational identification of regulatory SNPs with rSNP-MAPPER.

Riva A.

BMC Genomics. 2012 Jun 18;13 Suppl 4:S7. doi: 10.1186/1471-2164-13-S4-S7.

PMID:
22759655
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Disease-associated mutations that alter the RNA structural ensemble.

Halvorsen M, Martin JS, Broadaway S, Laederach A.

PLoS Genet. 2010 Aug 19;6(8):e1001074. doi: 10.1371/journal.pgen.1001074.

PMID:
20808897
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Disease phenocode analysis identifies SNP-guided microRNA maps (MirMaps) associated with human "master" disease genes.

Glinsky GV.

Cell Cycle. 2008 Dec;7(23):3680-94. Epub 2008 Dec 6.

PMID:
19029827
[PubMed - indexed for MEDLINE]
Free Article
9.

Powerful identification of cis-regulatory SNPs in human primary monocytes using allele-specific gene expression.

Almlöf JC, Lundmark P, Lundmark A, Ge B, Maouche S, Göring HH, Liljedahl U, Enström C, Brocheton J, Proust C, Godefroy T, Sambrook JG, Jolley J, Crisp-Hihn A, Foad N, Lloyd-Jones H, Stephens J, Gwilliam R, Rice CM, Hengstenberg C, Samani NJ, Erdmann J, Schunkert H, Pastinen T, Deloukas P, Goodall AH, Ouwehand WH, Cambien F, Syvänen AC.

PLoS One. 2012;7(12):e52260. doi: 10.1371/journal.pone.0052260. Epub 2012 Dec 26.

PMID:
23300628
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

[Polymorphisms in gene regulatory regions and their role in the physiopathology of complex disease in the post-genomic era].

Hernández-Romano J, Martínez-Barnetche J, Valverde-Garduño V.

Salud Publica Mex. 2009;51 Suppl 3:S455-62. Review. Spanish.

PMID:
20464219
[PubMed - indexed for MEDLINE]
Free Article
11.
12.

Genome-wide prediction of splice-modifying SNPs in human genes using a new analysis pipeline called AASsites.

Faber K, Glatting KH, Mueller PJ, Risch A, Hotz-Wagenblatt A.

BMC Bioinformatics. 2011;12 Suppl 4:S2. doi: 10.1186/1471-2105-12-S4-S2. Epub 2011 Jul 5.

PMID:
21992029
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Regulatory SNPs in complex diseases: their identification and functional validation.

Prokunina L, Alarcón-Riquelme ME.

Expert Rev Mol Med. 2004 Apr 27;6(10):1-15. Review.

PMID:
15122975
[PubMed - indexed for MEDLINE]
14.

Prediction of functional regulatory SNPs in monogenic and complex disease.

Zhao Y, Clark WT, Mort M, Cooper DN, Radivojac P, Mooney SD.

Hum Mutat. 2011 Oct;32(10):1183-90. doi: 10.1002/humu.21559. Epub 2011 Sep 9.

PMID:
21796725
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

rSNPBase: a database for curated regulatory SNPs.

Guo L, Du Y, Chang S, Zhang K, Wang J.

Nucleic Acids Res. 2014 Jan;42(Database issue):D1033-9. doi: 10.1093/nar/gkt1167. Epub 2013 Nov 26.

PMID:
24285297
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

LDGIdb: a database of gene interactions inferred from long-range strong linkage disequilibrium between pairs of SNPs.

Wang MC, Chen FC, Chen YZ, Huang YT, Chuang TJ.

BMC Res Notes. 2012 May 2;5:212. doi: 10.1186/1756-0500-5-212.

PMID:
22551073
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

In silico whole-genome screening for cancer-related single-nucleotide polymorphisms located in human mRNA untranslated regions.

Aouacheria A, Navratil V, López-Pérez R, Gutiérrez NC, Churkin A, Barash D, Mouchiroud D, Gautier C.

BMC Genomics. 2007 Jan 3;8:2.

PMID:
17201911
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A genome-wide survey for SNPs altering microRNA seed sites identifies functional candidates in GWAS.

Richardson K, Lai CQ, Parnell LD, Lee YC, Ordovas JM.

BMC Genomics. 2011 Oct 13;12:504. doi: 10.1186/1471-2164-12-504.

PMID:
21995669
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A predicted functional single-nucleotide polymorphism of bone morphogenetic protein-4 gene affects mRNA expression and shows a significant association with cutaneous melanoma in Southern Italian population.

Capasso M, Ayala F, Russo R, Avvisati RA, Asci R, Iolascon A.

J Cancer Res Clin Oncol. 2009 Dec;135(12):1799-807. doi: 10.1007/s00432-009-0628-y. Epub 2009 Jun 26.

PMID:
19557432
[PubMed - indexed for MEDLINE]
20.

MirSNP, a database of polymorphisms altering miRNA target sites, identifies miRNA-related SNPs in GWAS SNPs and eQTLs.

Liu C, Zhang F, Li T, Lu M, Wang L, Yue W, Zhang D.

BMC Genomics. 2012 Nov 23;13:661. doi: 10.1186/1471-2164-13-661.

PMID:
23173617
[PubMed - indexed for MEDLINE]
Free PMC Article

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