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Results: 1 to 20 of 163

1.

The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud.

Wolstencroft K, Haines R, Fellows D, Williams A, Withers D, Owen S, Soiland-Reyes S, Dunlop I, Nenadic A, Fisher P, Bhagat J, Belhajjame K, Bacall F, Hardisty A, Nieva de la Hidalga A, Balcazar Vargas MP, Sufi S, Goble C.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W557-61. doi: 10.1093/nar/gkt328. Epub 2013 May 2.

PMID:
23640334
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Tavaxy: integrating Taverna and Galaxy workflows with cloud computing support.

Abouelhoda M, Issa SA, Ghanem M.

BMC Bioinformatics. 2012 May 4;13:77. doi: 10.1186/1471-2105-13-77.

PMID:
22559942
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data.

Li P, Castrillo JI, Velarde G, Wassink I, Soiland-Reyes S, Owen S, Withers D, Oinn T, Pocock MR, Goble CA, Oliver SG, Kell DB.

BMC Bioinformatics. 2008 Aug 7;9:334. doi: 10.1186/1471-2105-9-334.

PMID:
18687127
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

CaGrid Workflow Toolkit: a Taverna based workflow tool for cancer grid.

Tan W, Madduri R, Nenadic A, Soiland-Reyes S, Sulakhe D, Foster I, Goble CA.

BMC Bioinformatics. 2010 Nov 2;11:542. doi: 10.1186/1471-2105-11-542.

PMID:
21044328
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Taverna: a tool for the composition and enactment of bioinformatics workflows.

Oinn T, Addis M, Ferris J, Marvin D, Senger M, Greenwood M, Carver T, Glover K, Pocock MR, Wipat A, Li P.

Bioinformatics. 2004 Nov 22;20(17):3045-54. Epub 2004 Jun 16.

PMID:
15201187
[PubMed - indexed for MEDLINE]
Free Article
6.

Biowep: a workflow enactment portal for bioinformatics applications.

Romano P, Bartocci E, Bertolini G, De Paoli F, Marra D, Mauri G, Merelli E, Milanesi L.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S19.

PMID:
17430563
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Text mining meets workflow: linking U-Compare with Taverna.

Kano Y, Dobson P, Nakanishi M, Tsujii J, Ananiadou S.

Bioinformatics. 2010 Oct 1;26(19):2486-7. doi: 10.1093/bioinformatics/btq464. Epub 2010 Aug 12.

PMID:
20709690
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Taverna: a tool for building and running workflows of services.

Hull D, Wolstencroft K, Stevens R, Goble C, Pocock MR, Li P, Oinn T.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W729-32.

PMID:
16845108
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

CalcTav--integration of a spreadsheet and Taverna workbench.

Sroka J, Krupa Ł, Kierzek AM, Tyszkiewicz J.

Bioinformatics. 2011 Sep 15;27(18):2618-9. doi: 10.1093/bioinformatics/btr425. Epub 2011 Jul 19.

PMID:
21775305
[PubMed - indexed for MEDLINE]
Free Article
10.

BioMoby extensions to the Taverna workflow management and enactment software.

Kawas E, Senger M, Wilkinson MD.

BMC Bioinformatics. 2006 Nov 30;7:523.

PMID:
17137515
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

myExperiment: a repository and social network for the sharing of bioinformatics workflows.

Goble CA, Bhagat J, Aleksejevs S, Cruickshank D, Michaelides D, Newman D, Borkum M, Bechhofer S, Roos M, Li P, De Roure D.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W677-82. doi: 10.1093/nar/gkq429. Epub 2010 May 25.

PMID:
20501605
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

An overview of the BioExtract Server: a distributed, Web-based system for genomic analysis.

Lushbough CM, Brendel VP.

Adv Exp Med Biol. 2010;680:361-9. doi: 10.1007/978-1-4419-5913-3_41.

PMID:
20865520
[PubMed - indexed for MEDLINE]
13.

New developments on the cheminformatics open workflow environment CDK-Taverna.

Truszkowski A, Jayaseelan KV, Neumann S, Willighagen EL, Zielesny A, Steinbeck C.

J Cheminform. 2011 Dec 13;3:54. doi: 10.1186/1758-2946-3-54.

PMID:
22166170
[PubMed]
Free PMC Article
14.

Conveyor: a workflow engine for bioinformatic analyses.

Linke B, Giegerich R, Goesmann A.

Bioinformatics. 2011 Apr 1;27(7):903-11. doi: 10.1093/bioinformatics/btr040. Epub 2011 Jan 28.

PMID:
21278189
[PubMed - indexed for MEDLINE]
Free Article
15.

Community-driven computational biology with Debian Linux.

Möller S, Krabbenhöft HN, Tille A, Paleino D, Williams A, Wolstencroft K, Goble C, Holland R, Belhachemi D, Plessy C.

BMC Bioinformatics. 2010 Dec 21;11 Suppl 12:S5. doi: 10.1186/1471-2105-11-S12-S5.

PMID:
21210984
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The Taverna Interaction Service: enabling manual interaction in workflows.

Lanzén A, Oinn T.

Bioinformatics. 2008 Apr 15;24(8):1118-20. doi: 10.1093/bioinformatics/btn082. Epub 2008 Mar 12.

PMID:
18337261
[PubMed - indexed for MEDLINE]
Free Article
17.

Opening new gateways to workflows for life scientists.

Karasavvas K, Wolstencroft K, Mina E, Cruickshank D, Williams A, De Roure D, Goble C, Roos M.

Stud Health Technol Inform. 2012;175:131-41.

PMID:
22942004
[PubMed - indexed for MEDLINE]
18.

Workflows for microarray data processing in the Kepler environment.

Stropp T, McPhillips T, Ludäscher B, Bieda M.

BMC Bioinformatics. 2012 May 17;13:102. doi: 10.1186/1471-2105-13-102.

PMID:
22594911
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

CDK-Taverna: an open workflow environment for cheminformatics.

Kuhn T, Willighagen EL, Zielesny A, Steinbeck C.

BMC Bioinformatics. 2010 Mar 29;11:159. doi: 10.1186/1471-2105-11-159.

PMID:
20346188
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Integrating ARC grid middleware with Taverna workflows.

Krabbenhöft HN, Möller S, Bayer D.

Bioinformatics. 2008 May 1;24(9):1221-2. doi: 10.1093/bioinformatics/btn095. Epub 2008 Mar 19.

PMID:
18353787
[PubMed - indexed for MEDLINE]
Free Article

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