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Results: 1 to 20 of 114

Similar articles for PubMed (Select 23621762)

1.

DNA bending propensity in the presence of base mismatches: implications for DNA repair.

Sharma M, Predeus AV, Mukherjee S, Feig M.

J Phys Chem B. 2013 May 23;117(20):6194-205. doi: 10.1021/jp403127a. Epub 2013 May 10.

2.

Thermodynamics of DNA duplexes with adjacent G.A mismatches.

Li Y, Zon G, Wilson WD.

Biochemistry. 1991 Jul 30;30(30):7566-72.

PMID:
1854755
3.

Molecular dynamics simulations of B '-DNA: sequence effects on A-tract-induced bending and flexibility.

McConnell KJ, Beveridge DL.

J Mol Biol. 2001 Nov 16;314(1):23-40.

PMID:
11724529
4.

Base-flipping mechanism in postmismatch recognition by MutS.

Law SM, Feig M.

Biophys J. 2011 Nov 2;101(9):2223-31. doi: 10.1016/j.bpj.2011.09.045. Epub 2011 Nov 1.

6.

Unusual DNA duplex and hairpin motifs.

Chou SH, Chin KH, Wang AH.

Nucleic Acids Res. 2003 May 15;31(10):2461-74. Review.

7.

Mismatches in DNA double strands: thermodynamic parameters and their correlation to repair efficiencies.

Werntges H, Steger G, Riesner D, Fritz HJ.

Nucleic Acids Res. 1986 May 12;14(9):3773-90.

8.

NMR spectroscopic and enzymatic studies of DNA hairpins containing mismatches in the EcoRI recognition site.

Germann MW, Kalisch BW, Varnum JM, Vogel HJ, van de Sande JH.

Biochem Cell Biol. 1998;76(2-3):391-402.

PMID:
9923708
9.

Dimer of 2,7-diamino-1,8-naphthyridine for the detection of mismatches formed by pyrimidine nucleotide bases.

Kobori A, Nakatani K.

Bioorg Med Chem. 2008 Dec 15;16(24):10338-44. doi: 10.1016/j.bmc.2008.10.035. Epub 2008 Oct 17.

PMID:
18996698
10.
11.

Thermodynamics and kinetics for base pair opening in the DNA decamer duplexes containing cyclobutane pyrimidine dimer.

Bang J, Kang YM, Park CJ, Lee JH, Choi BS.

FEBS Lett. 2009 Jun 18;583(12):2037-41. doi: 10.1016/j.febslet.2009.05.015. Epub 2009 May 19.

12.

Structures of Escherichia coli DNA mismatch repair enzyme MutS in complex with different mismatches: a common recognition mode for diverse substrates.

Natrajan G, Lamers MH, Enzlin JH, Winterwerp HH, Perrakis A, Sixma TK.

Nucleic Acids Res. 2003 Aug 15;31(16):4814-21.

13.

Analysis of local helix geometry in three B-DNA decamers and eight dodecamers.

Yanagi K, Privé GG, Dickerson RE.

J Mol Biol. 1991 Jan 5;217(1):201-14.

PMID:
1988678
14.

Base pair opening within B-DNA: free energy pathways for GC and AT pairs from umbrella sampling simulations.

Giudice E, Várnai P, Lavery R.

Nucleic Acids Res. 2003 Mar 1;31(5):1434-43. Erratum in: Nucleic Acids Res. 2003 May 15;31(10):e57.

15.
16.

Mispair specificity of methyl-directed DNA mismatch correction in vitro.

Su SS, Lahue RS, Au KG, Modrich P.

J Biol Chem. 1988 May 15;263(14):6829-35. Erratum in: J Biol Chem 1988 Aug 5;263(22):11015.

17.

The Phe-X-Glu DNA binding motif of MutS. The role of hydrogen bonding in mismatch recognition.

Schofield MJ, Brownewell FE, Nayak S, Du C, Kool ET, Hsieh P.

J Biol Chem. 2001 Dec 7;276(49):45505-8. Epub 2001 Oct 15.

18.

Magnitude and direction of DNA bending induced by screw-axis orientation: influence of sequence, mismatches and abasic sites.

Curuksu J, Zakrzewska K, Zacharias M.

Nucleic Acids Res. 2008 Apr;36(7):2268-83. doi: 10.1093/nar/gkm1135. Epub 2008 Feb 20.

19.

Recognition of abasic sites and single base bulges in DNA by a metalloinsertor.

Zeglis BM, Boland JA, Barton JK.

Biochemistry. 2009 Feb 10;48(5):839-49. doi: 10.1021/bi801885w.

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