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Items: 1 to 20 of 92

1.

Analysis of sequence variation underlying tissue-specific transcription factor binding and gene expression.

Lower KM, De Gobbi M, Hughes JR, Derry CJ, Ayyub H, Sloane-Stanley JA, Vernimmen D, Garrick D, Gibbons RJ, Higgs DR.

Hum Mutat. 2013 Aug;34(8):1140-8. doi: 10.1002/humu.22343. Epub 2013 Jun 18.

PMID:
23616472
2.

Effects of sequence variation on differential allelic transcription factor occupancy and gene expression.

Reddy TE, Gertz J, Pauli F, Kucera KS, Varley KE, Newberry KM, Marinov GK, Mortazavi A, Williams BA, Song L, Crawford GE, Wold B, Willard HF, Myers RM.

Genome Res. 2012 May;22(5):860-9. doi: 10.1101/gr.131201.111. Epub 2012 Feb 2.

3.

Cell-type specificity of ChIP-predicted transcription factor binding sites.

Håndstad T, Rye M, Močnik R, Drabløs F, Sætrom P.

BMC Genomics. 2012 Aug 3;13:372. doi: 10.1186/1471-2164-13-372.

4.

Novel polymorphisms in UTR and coding region of inducible heat shock protein 70.1 gene in tropically adapted Indian zebu cattle (Bos indicus) and riverine buffalo (Bubalus bubalis).

Sodhi M, Mukesh M, Kishore A, Mishra BP, Kataria RS, Joshi BK.

Gene. 2013 Sep 25;527(2):606-15. doi: 10.1016/j.gene.2013.05.078. Epub 2013 Jun 19.

PMID:
23792016
5.

A genome-wide screen for genetic variants that modify the recruitment of REST to its target genes.

Johnson R, Richter N, Bogu GK, Bhinge A, Teng SW, Choo SH, Andrieux LO, de Benedictis C, Jauch R, Stanton LW.

PLoS Genet. 2012;8(4):e1002624. doi: 10.1371/journal.pgen.1002624. Epub 2012 Apr 5.

6.

Genomic structure and analysis of transcriptional regulation of the mouse zinc-fingers and homeoboxes 1 (ZHX1) gene.

Shou Z, Yamada K, Inazu T, Kawata H, Hirano S, Mizutani T, Yazawa T, Sekiguchi T, Yoshino M, Kajitani T, Okada K, Miyamoto K.

Gene. 2003 Jan 2;302(1-2):83-94.

PMID:
12527199
7.

Cis-regulatory variations: a study of SNPs around genes showing cis-linkage in segregating mouse populations.

GuhaThakurta D, Xie T, Anand M, Edwards SW, Li G, Wang SS, Schadt EE.

BMC Genomics. 2006 Sep 15;7:235.

8.

Variants in RET associated with Hirschsprung's disease affect binding of transcription factors and gene expression.

Sribudiani Y, Metzger M, Osinga J, Rey A, Burns AJ, Thapar N, Hofstra RM.

Gastroenterology. 2011 Feb;140(2):572-582.e2. doi: 10.1053/j.gastro.2010.10.044. Epub 2010 Oct 25.

PMID:
20977903
10.

Single nucleotide polymorphism in transcriptional regulatory regions and expression of environmentally responsive genes.

Wang X, Tomso DJ, Liu X, Bell DA.

Toxicol Appl Pharmacol. 2005 Sep 1;207(2 Suppl):84-90. Review.

PMID:
16002116
11.

A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data.

He X, Chen CC, Hong F, Fang F, Sinha S, Ng HH, Zhong S.

PLoS One. 2009 Dec 1;4(12):e8155. doi: 10.1371/journal.pone.0008155.

12.
13.

Sequence and chromatin determinants of cell-type-specific transcription factor binding.

Arvey A, Agius P, Noble WS, Leslie C.

Genome Res. 2012 Sep;22(9):1723-34. doi: 10.1101/gr.127712.111.

14.

Annotation of functional variation in personal genomes using RegulomeDB.

Boyle AP, Hong EL, Hariharan M, Cheng Y, Schaub MA, Kasowski M, Karczewski KJ, Park J, Hitz BC, Weng S, Cherry JM, Snyder M.

Genome Res. 2012 Sep;22(9):1790-7. doi: 10.1101/gr.137323.112.

16.
17.

From sequence to dynamics: the effects of transcription factor and polymerase concentration changes on activated and repressed promoters.

Pérez AG, Angarica VE, Collado-Vides J, Vasconcelos AT.

BMC Mol Biol. 2009 Sep 22;10:92. doi: 10.1186/1471-2199-10-92.

18.
19.

DNA polymorphisms in potential regulatory elements of the CFTR gene alter transcription factor binding.

Rowntree R, Harris A.

Hum Genet. 2002 Jul;111(1):66-74. Epub 2002 Jun 6.

PMID:
12136238
20.

Transcriptional regulation of the mouse PNRC2 promoter by the nuclear factor Y (NFY) and E2F1.

Zhou D, Masri S, Ye JJ, Chen S.

Gene. 2005 Nov 21;361:89-100. Epub 2005 Sep 21.

PMID:
16181749
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