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Items: 1 to 20 of 104


The SADI Personal Health Lens: A Web Browser-Based System for Identifying Personally Relevant Drug Interactions.

Vandervalk B, McCarthy EL, Cruz-Toledo J, Klein A, Baker CJ, Dumontier M, Wilkinson MD.

JMIR Res Protoc. 2013 Apr 5;2(1):e14. doi: 10.2196/resprot.2315.


The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation.

Wilkinson MD, Vandervalk B, McCarthy L.

J Biomed Semantics. 2011 Oct 24;2(1):8. doi: 10.1186/2041-1480-2-8.


Semantic Web integration of Cheminformatics resources with the SADI framework.

Chepelev LL, Dumontier M.

J Cheminform. 2011 May 16;3:16. doi: 10.1186/1758-2946-3-16.


Prototype semantic infrastructure for automated small molecule classification and annotation in lipidomics.

Chepelev LL, Riazanov A, Kouznetsov A, Low HS, Dumontier M, Baker CJ.

BMC Bioinformatics. 2011 Jul 26;12:303. doi: 10.1186/1471-2105-12-303.


Deploying mutation impact text-mining software with the SADI Semantic Web Services framework.

Riazanov A, Laurila JB, Baker CJ.

BMC Bioinformatics. 2011;12 Suppl 4:S6. doi: 10.1186/1471-2105-12-S4-S6. Epub 2011 Jul 5.


SADI, SHARE, and the in silico scientific method.

Wilkinson MD, McCarthy L, Vandervalk B, Withers D, Kawas E, Samadian S.

BMC Bioinformatics. 2010 Dec 21;11 Suppl 12:S7. doi: 10.1186/1471-2105-11-S12-S7.


SOMWeb: a semantic web-based system for supporting collaboration of distributed medical communities of practice.

Falkman G, Gustafsson M, Jontell M, Torgersson O.

J Med Internet Res. 2008 Aug 26;10(3):e25. doi: 10.2196/jmir.1059.


Automatically exposing OpenLifeData via SADI semantic Web Services.

González AR, Callahan A, Cruz-Toledo J, Garcia A, Egaña Aranguren M, Dumontier M, Wilkinson MD.

J Biomed Semantics. 2014 Nov 19;5:46. doi: 10.1186/2041-1480-5-46. eCollection 2014.


PREDOSE: a semantic web platform for drug abuse epidemiology using social media.

Cameron D, Smith GA, Daniulaityte R, Sheth AP, Dave D, Chen L, Anand G, Carlson R, Watkins KZ, Falck R.

J Biomed Inform. 2013 Dec;46(6):985-97. doi: 10.1016/j.jbi.2013.07.007. Epub 2013 Jul 25.


Semantic querying of relational data for clinical intelligence: a semantic web services-based approach.

Riazanov A, Klein A, Shaban-Nejad A, Rose GW, Forster AJ, Buckeridge DL, Baker CJ.

J Biomed Semantics. 2013 Mar 13;4(1):9. doi: 10.1186/2041-1480-4-9.


Web architecture for the remote browsing and analysis of distributed medical images and data.

Masseroli M, Pinciroli F.

Stud Health Technol Inform. 2001;84(Pt 1):43-7.


Executing SADI services in Galaxy.

Aranguren ME, González AR, Wilkinson MD.

J Biomed Semantics. 2014 Sep 22;5(1):42. doi: 10.1186/2041-1480-5-42. eCollection 2014.


Applications and methods utilizing the Simple Semantic Web Architecture and Protocol (SSWAP) for bioinformatics resource discovery and disparate data and service integration.

Nelson RT, Avraham S, Shoemaker RC, May GD, Ware D, Gessler DD.

BioData Min. 2010 Jun 4;3(1):3. doi: 10.1186/1756-0381-3-3.


Knowledge-based personalized search engine for the Web-based Human Musculoskeletal System Resources (HMSR) in biomechanics.

Dao TT, Hoang TN, Ta XH, Tho MC.

J Biomed Inform. 2013 Feb;46(1):160-73. doi: 10.1016/j.jbi.2012.11.001. Epub 2012 Nov 10.


Enhanced reproducibility of SADI web service workflows with Galaxy and Docker.

Aranguren ME, Wilkinson MD.

Gigascience. 2015 Dec 3;4:59. doi: 10.1186/s13742-015-0092-3. eCollection 2015.


Seahawk: moving beyond HTML in Web-based bioinformatics analysis.

Gordon PM, Sensen CW.

BMC Bioinformatics. 2007 Jun 18;8:208.


A user-centred evaluation framework for the Sealife semantic web browsers.

Oliver H, Diallo G, de Quincey E, Alexopoulou D, Habermann B, Kostkova P, Schroeder M, Jupp S, Khelif K, Stevens R, Jawaheer G, Madle G.

BMC Bioinformatics. 2009 Oct 1;10 Suppl 10:S14. doi: 10.1186/1471-2105-10-S10-S14.


Design and implementation of a portal for the medical equipment market: MEDICOM.

Palamas S, Kalivas D, Panou-Diamandi O, Zeelenberg C, van Nimwegen C.

J Med Internet Res. 2001 Oct-Dec;3(4):E32.


RIS minus PACS equals film.

Tellis WM, Andriole KP, Jovais CS, Avrin DE.

J Digit Imaging. 2002;15 Suppl 1:20-6. Epub 2002 Mar 21.


Java-based browsing, visualization and processing of heterogeneous medical data from remote repositories.

Masseroli M, Bonacina S, Pinciroli F.

Conf Proc IEEE Eng Med Biol Soc. 2004;5:3326-9.

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