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Structural, functional and molecular docking study to characterize GMI1 from Arabidopsis thaliana.

Islam MR, Hosen MI, Zaman A, Islam MO.

Interdiscip Sci. 2013 Mar;5(1):13-22. doi: 10.1007/s12539-013-0153-1. Epub 2013 Apr 19.


GMI1, a structural-maintenance-of-chromosomes-hinge domain-containing protein, is involved in somatic homologous recombination in Arabidopsis.

Böhmdorfer G, Schleiffer A, Brunmeir R, Ferscha S, Nizhynska V, Kozák J, Angelis KJ, Kreil DP, Schweizer D.

Plant J. 2011 Aug;67(3):420-33. doi: 10.1111/j.1365-313X.2011.04604.x. Epub 2011 May 20.


Structural models of zebrafish (Danio rerio) NOD1 and NOD2 NACHT domains suggest differential ATP binding orientations: insights from computational modeling, docking and molecular dynamics simulations.

Maharana J, Sahoo BR, Bej A, Jena I, Parida A, Sahoo JR, Dehury B, Patra MC, Martha SR, Balabantray S, Pradhan SK, Behera BK.

PLoS One. 2015 Mar 26;10(3):e0121415. doi: 10.1371/journal.pone.0121415. eCollection 2015.


ATP binding to the C terminus of the Arabidopsis thaliana nitrate/proton antiporter, AtCLCa, regulates nitrate transport into plant vacuoles.

De Angeli A, Moran O, Wege S, Filleur S, Ephritikhine G, Thomine S, Barbier-Brygoo H, Gambale F.

J Biol Chem. 2009 Sep 25;284(39):26526-32. doi: 10.1074/jbc.M109.005132. Epub 2009 Jul 27.


A C-terminal Myb extension domain defines a novel family of double-strand telomeric DNA-binding proteins in Arabidopsis.

Karamysheva ZN, Surovtseva YV, Vespa L, Shakirov EV, Shippen DE.

J Biol Chem. 2004 Nov 12;279(46):47799-807. Epub 2004 Sep 10.


Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators.

Hosoda K, Imamura A, Katoh E, Hatta T, Tachiki M, Yamada H, Mizuno T, Yamazaki T.

Plant Cell. 2002 Sep;14(9):2015-29.


In silico targeted genome mining and comparative modelling reveals a putative protein similar to an Arabidopsis drought tolerance DNA binding transcription factor in Chromosome 6 of Sorghum bicolor genome.

Shanker AK, Maddaala A, Kumar MA, Yadav SK, Maheswari M, Venkateswarlu B.

Interdiscip Sci. 2012 Jun;4(2):133-41. doi: 10.1007/s12539-012-0121-1. Epub 2012 Jul 29.


Interactions between the R2R3-MYB transcription factor, AtMYB61, and target DNA binding sites.

Prouse MB, Campbell MM.

PLoS One. 2013 May 31;8(5):e65132. doi: 10.1371/journal.pone.0065132. Print 2013.


The structure of "defective in induced resistance" protein of Arabidopsis thaliana, DIR1, reveals a new type of lipid transfer protein.

Lascombe MB, Bakan B, Buhot N, Marion D, Blein JP, Larue V, Lamb C, Prangé T.

Protein Sci. 2008 Sep;17(9):1522-30. doi: 10.1110/ps.035972.108. Epub 2008 Jun 13.


Solution structure of telomere binding domain of AtTRB2 derived from Arabidopsis thaliana.

Yun JH, Lee WK, Kim H, Kim E, Cheong C, Cho MH, Lee W.

Biochem Biophys Res Commun. 2014 Sep 26;452(3):436-42. doi: 10.1016/j.bbrc.2014.08.095. Epub 2014 Aug 27.


Identification of specific DNA binding residues in the TCP family of transcription factors in Arabidopsis.

Aggarwal P, Das Gupta M, Joseph AP, Chatterjee N, Srinivasan N, Nath U.

Plant Cell. 2010 Apr;22(4):1174-89. doi: 10.1105/tpc.109.066647. Epub 2010 Apr 2.


SLIDE, the protein interacting domain of Imitation Switch remodelers, binds DDT-domain proteins of different subfamilies in chromatin remodeling complexes.

Dong J, Gao Z, Liu S, Li G, Yang Z, Huang H, Xu L.

J Integr Plant Biol. 2013 Oct;55(10):928-37. doi: 10.1111/jipb.12069. Epub 2013 Sep 16.


Characterization of two Arabidopsis thaliana myb-like proteins showing affinity to telomeric DNA sequence.

Schrumpfová P, Kuchar M, Miková G, Skrísovská L, Kubicárová T, Fajkus J.

Genome. 2004 Apr;47(2):316-24.


Structural biochemistry of ATP-driven dimerization and DNA-stimulated activation of SMC ATPases.

Lammens A, Schele A, Hopfner KP.

Curr Biol. 2004 Oct 5;14(19):1778-82.


Pseudo half-molecules of the ABC transporter, COMATOSE, bind Pex19 and target to peroxisomes independently but are both required for activity.

Nyathi Y, Zhang X, Baldwin JM, Bernhardt K, Johnson B, Baldwin SA, Theodoulou FL, Baker A.

FEBS Lett. 2012 Jul 30;586(16):2280-6. doi: 10.1016/j.febslet.2012.05.065. Epub 2012 Jun 16.


Mutations in the Arabidopsis peroxisomal ABC transporter COMATOSE allow differentiation between multiple functions in planta: insights from an allelic series.

Dietrich D, Schmuths H, De Marcos Lousa C, Baldwin JM, Baldwin SA, Baker A, Theodoulou FL, Holdsworth MJ.

Mol Biol Cell. 2009 Jan;20(1):530-43. doi: 10.1091/mbc.E08-07-0745. Epub 2008 Nov 19.


Functional analysis of light-harvesting-like protein 3 (LIL3) and its light-harvesting chlorophyll-binding motif in Arabidopsis.

Takahashi K, Takabayashi A, Tanaka A, Tanaka R.

J Biol Chem. 2014 Jan 10;289(2):987-99. doi: 10.1074/jbc.M113.525428. Epub 2013 Nov 25.


Coiled-coil dimerization of the LOV2 domain of the blue-light photoreceptor phototropin 1 from Arabidopsis thaliana.

Halavaty AS, Moffat K.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Dec;69(Pt 12):1316-21. doi: 10.1107/S1744309113029199. Epub 2013 Nov 28.

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