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Results: 1 to 20 of 127

1.

DomHR: accurately identifying domain boundaries in proteins using a hinge region strategy.

Zhang XY, Lu LJ, Song Q, Yang QQ, Li DP, Sun JM, Li TH, Cong PS.

PLoS One. 2013 Apr 11;8(4):e60559. doi: 10.1371/journal.pone.0060559. Print 2013.

PMID:
23593247
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Ab initio and homology based prediction of protein domains by recursive neural networks.

Walsh I, Martin AJ, Mooney C, Rubagotti E, Vullo A, Pollastri G.

BMC Bioinformatics. 2009 Jun 26;10:195. doi: 10.1186/1471-2105-10-195.

PMID:
19558651
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Evaluation of domain prediction in CASP6.

Tai CH, Lee WJ, Vincent JJ, Lee B.

Proteins. 2005;61 Suppl 7:183-92.

PMID:
16187361
[PubMed - indexed for MEDLINE]
4.

Automated prediction of domain boundaries in CASP6 targets using Ginzu and RosettaDOM.

Kim DE, Chivian D, Malmström L, Baker D.

Proteins. 2005;61 Suppl 7:193-200.

PMID:
16187362
[PubMed - indexed for MEDLINE]
5.

SnapDRAGON: a method to delineate protein structural domains from sequence data.

George RA, Heringa J.

J Mol Biol. 2002 Feb 22;316(3):839-51.

PMID:
11866536
[PubMed - indexed for MEDLINE]
6.

Domain boundary prediction based on profile domain linker propensity index.

Dong Q, Wang X, Lin L, Xu Z.

Comput Biol Chem. 2006 Apr;30(2):127-33. Epub 2006 Mar 13.

PMID:
16531120
[PubMed - indexed for MEDLINE]
7.

Armadillo: domain boundary prediction by amino acid composition.

Dumontier M, Yao R, Feldman HJ, Hogue CW.

J Mol Biol. 2005 Jul 29;350(5):1061-73.

PMID:
15978619
[PubMed - indexed for MEDLINE]
8.

Prediction of protein domain boundaries from sequence alone.

Galzitskaya OV, Melnik BS.

Protein Sci. 2003 Apr;12(4):696-701.

PMID:
12649427
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

[Prediction of protein domain boundaries based on statistics of appearance of amino acid residues].

Galzitskaia OV, Dovidchenko NV, Lobanov MIu, Garbuzinskiĭ SA.

Mol Biol (Mosk). 2006 Jan-Feb;40(1):111-21. Russian.

PMID:
16523698
[PubMed - indexed for MEDLINE]
10.

Using inferred residue contacts to distinguish between correct and incorrect protein models.

Miller CS, Eisenberg D.

Bioinformatics. 2008 Jul 15;24(14):1575-82. doi: 10.1093/bioinformatics/btn248. Epub 2008 May 29.

PMID:
18511466
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

CATHEDRAL: a fast and effective algorithm to predict folds and domain boundaries from multidomain protein structures.

Redfern OC, Harrison A, Dallman T, Pearl FM, Orengo CA.

PLoS Comput Biol. 2007 Nov;3(11):e232.

PMID:
18052539
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

DoBo: Protein domain boundary prediction by integrating evolutionary signals and machine learning.

Eickholt J, Deng X, Cheng J.

BMC Bioinformatics. 2011 Feb 1;12:43. doi: 10.1186/1471-2105-12-43.

PMID:
21284866
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

StoneHinge: hinge prediction by network analysis of individual protein structures.

Keating KS, Flores SC, Gerstein MB, Kuhn LA.

Protein Sci. 2009 Feb;18(2):359-71. doi: 10.1002/pro.38.

PMID:
19180449
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Delineation of modular proteins: domain boundary prediction from sequence information.

Kong L, Ranganathan S.

Brief Bioinform. 2004 Jun;5(2):179-92.

PMID:
15260897
[PubMed - indexed for MEDLINE]
Free Article
15.

Prediction of distant residue contacts with the use of evolutionary information.

Vicatos S, Reddy BV, Kaznessis Y.

Proteins. 2005 Mar 1;58(4):935-49.

PMID:
15645442
[PubMed - indexed for MEDLINE]
16.

DOMAC: an accurate, hybrid protein domain prediction server.

Cheng J.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W354-6. Epub 2007 Jun 6.

PMID:
17553833
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Statistical geometry based prediction of nonsynonymous SNP functional effects using random forest and neuro-fuzzy classifiers.

Barenboim M, Masso M, Vaisman II, Jamison DC.

Proteins. 2008 Jun;71(4):1930-9. doi: 10.1002/prot.21838.

PMID:
18186470
[PubMed - indexed for MEDLINE]
18.

Bayesian data mining of protein domains gives an efficient predictive algorithm and new insight.

Joshi RR, Samant VV.

J Mol Model. 2007 Jan;13(1):275-82. Epub 2006 Oct 7.

PMID:
17028865
[PubMed - indexed for MEDLINE]
19.

Hinge Atlas: relating protein sequence to sites of structural flexibility.

Flores SC, Lu LJ, Yang J, Carriero N, Gerstein MB.

BMC Bioinformatics. 2007 May 22;8:167.

PMID:
17519025
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8.

Ezkurdia I, Graña O, Izarzugaza JM, Tress ML.

Proteins. 2009;77 Suppl 9:196-209. doi: 10.1002/prot.22554.

PMID:
19714769
[PubMed - indexed for MEDLINE]

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