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Results: 1 to 20 of 92

1.

The ENCODE project: missteps overshadowing a success.

Eddy SR.

Curr Biol. 2013 Apr 8;23(7):R259-61. doi: 10.1016/j.cub.2013.03.023.

PMID:
23578867
[PubMed - indexed for MEDLINE]
Free Article
2.

Is junk DNA bunk? A critique of ENCODE.

Doolittle WF.

Proc Natl Acad Sci U S A. 2013 Apr 2;110(14):5294-300. doi: 10.1073/pnas.1221376110. Epub 2013 Mar 11.

PMID:
23479647
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

MycoRRdb: a database of computationally identified regulatory regions within intergenic sequences in mycobacterial genomes.

Midha M, Prasad NK, Vindal V.

PLoS One. 2012;7(4):e36094. doi: 10.1371/journal.pone.0036094. Epub 2012 Apr 26.

PMID:
22563442
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The making of ENCODE: Lessons for big-data projects.

Birney E.

Nature. 2012 Sep 6;489(7414):49-51. doi: 10.1038/489049a. No abstract available.

PMID:
22955613
[PubMed - indexed for MEDLINE]
5.

ENCODE whole-genome data in the UCSC Genome Browser.

Rosenbloom KR, Dreszer TR, Pheasant M, Barber GP, Meyer LR, Pohl A, Raney BJ, Wang T, Hinrichs AS, Zweig AS, Fujita PA, Learned K, Rhead B, Smith KE, Kuhn RM, Karolchik D, Haussler D, Kent WJ.

Nucleic Acids Res. 2010 Jan;38(Database issue):D620-5. doi: 10.1093/nar/gkp961. Epub 2009 Nov 17.

PMID:
19920125
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Discovering sequences with potential regulatory characteristics.

Bina M, Wyss P, Lazarus SA, Shah SR, Ren W, Szpankowski W, Crawford GE, Park SP, Song XC.

Genomics. 2009 Apr;93(4):314-22. doi: 10.1016/j.ygeno.2008.11.008. Epub 2008 Dec 30.

PMID:
19084590
[PubMed - indexed for MEDLINE]
Free Article
7.

Applied bioinformatics for the identification of regulatory elements.

Wasserman WW, Sandelin A.

Nat Rev Genet. 2004 Apr;5(4):276-87. Review. No abstract available.

PMID:
15131651
[PubMed - indexed for MEDLINE]
8.

Unexpected conserved non-coding DNA blocks in mammals.

Gaffney DJ, Keightley PD.

Trends Genet. 2004 Aug;20(8):332-7.

PMID:
15262402
[PubMed - indexed for MEDLINE]
9.

Evidence for turnover of functional noncoding DNA in mammalian genome evolution.

Smith NG, Brandström M, Ellegren H.

Genomics. 2004 Nov;84(5):806-13.

PMID:
15475259
[PubMed - indexed for MEDLINE]
10.

A composite of multiple signals distinguishes causal variants in regions of positive selection.

Grossman SR, Shlyakhter I, Karlsson EK, Byrne EH, Morales S, Frieden G, Hostetter E, Angelino E, Garber M, Zuk O, Lander ES, Schaffner SF, Sabeti PC.

Science. 2010 Feb 12;327(5967):883-6. doi: 10.1126/science.1183863. Epub 2010 Jan 7. Erratum in: Science. 2012 Feb17;335(6070):796. Shylakhter, Ilya [corrected to Shlyakhter, Ilya]..

PMID:
20056855
[PubMed - indexed for MEDLINE]
Free Article
11.

Big science: The cancer genome challenge.

Ledford H.

Nature. 2010 Apr 15;464(7291):972-4. doi: 10.1038/464972a. No abstract available.

PMID:
20393534
[PubMed - indexed for MEDLINE]
12.

Translating the ENCyclopedia Of DNA Elements Project findings to the clinic: ENCODE's implications for eye disease.

Sanfilippo PG, Hewitt AW.

Clin Experiment Ophthalmol. 2014 Jan-Feb;42(1):78-83. doi: 10.1111/ceo.12150. Epub 2013 Jul 29.

PMID:
24433357
[PubMed - indexed for MEDLINE]
13.

Genomics: ENCODE leads the way on big data.

Gerstein M.

Nature. 2012 Sep 13;489(7415):208. doi: 10.1038/489208b. No abstract available.

PMID:
22972285
[PubMed - indexed for MEDLINE]
14.

Structural relationships between highly conserved elements and genes in vertebrate genomes.

Sun H, Skogerbø G, Wang Z, Liu W, Li Y.

PLoS One. 2008;3(11):e3727. doi: 10.1371/journal.pone.0003727. Epub 2008 Nov 14.

PMID:
19008958
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Non-coding regulatory regions in genomes. Editorial.

Gomez Skarmeta JL.

Brief Funct Genomic Proteomic. 2009 Jul;8(4):213-4. doi: 10.1093/bfgp/elp034. No abstract available.

PMID:
19752043
[PubMed - indexed for MEDLINE]
Free Article
16.

Decoding cis-regulatory systems in ascidians.

Kusakabe T.

Zoolog Sci. 2005 Feb;22(2):129-46. Review.

PMID:
15738634
[PubMed - indexed for MEDLINE]
17.

A significant fraction of conserved noncoding DNA in human and mouse consists of predicted matrix attachment regions.

Glazko GV, Koonin EV, Rogozin IB, Shabalina SA.

Trends Genet. 2003 Mar;19(3):119-24. Review.

PMID:
12615002
[PubMed - indexed for MEDLINE]
18.

Divergence of regulatory sequences in duplicated fish genes.

Van Hellemont R, Blomme T, Van de Peer Y, Marchal K.

Genome Dyn. 2007;3:81-100. doi: 10.1159/000107605.

PMID:
18753786
[PubMed - indexed for MEDLINE]
19.

Arabidopsis intragenomic conserved noncoding sequence.

Thomas BC, Rapaka L, Lyons E, Pedersen B, Freeling M.

Proc Natl Acad Sci U S A. 2007 Feb 27;104(9):3348-53. Epub 2007 Feb 14.

PMID:
17301222
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The ENCODE (ENCyclopedia Of DNA Elements) Project.

ENCODE Project Consortium.

Science. 2004 Oct 22;306(5696):636-40.

PMID:
15499007
[PubMed - indexed for MEDLINE]

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