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Country-specific antibiotic use practices impact the human gut resistome.

Forslund K, Sunagawa S, Kultima JR, Mende DR, Arumugam M, Typas A, Bork P.

Genome Res. 2013 Jul;23(7):1163-9. doi: 10.1101/gr.155465.113. Epub 2013 Apr 8.


Metagenomic insights into the human gut resistome and the forces that shape it.

Forslund K, Sunagawa S, Coelho LP, Bork P.

Bioessays. 2014 Mar;36(3):316-29. doi: 10.1002/bies.201300143. Epub 2014 Jan 29. Review.


In silico analysis of antibiotic resistance genes in the gut microflora of individuals from diverse geographies and age-groups.

Ghosh TS, Gupta SS, Nair GB, Mande SS.

PLoS One. 2013 Dec 31;8(12):e83823. doi: 10.1371/journal.pone.0083823. eCollection 2013.


Antibiotics in feed induce prophages in swine fecal microbiomes.

Allen HK, Looft T, Bayles DO, Humphrey S, Levine UY, Alt D, Stanton TB.

MBio. 2011 Nov 29;2(6). pii: e00260-11. doi: 10.1128/mBio.00260-11. Print 2011.


Identification of aminoglycoside and β-lactam resistance genes from within an infant gut functional metagenomic library.

Fouhy F, Ogilvie LA, Jones BV, Ross RP, Ryan AC, Dempsey EM, Fitzgerald GF, Stanton C, Cotter PD.

PLoS One. 2014 Sep 23;9(9):e108016. doi: 10.1371/journal.pone.0108016. eCollection 2014.


Distribution and quantification of antibiotic resistant genes and bacteria across agricultural and non-agricultural metagenomes.

Durso LM, Miller DN, Wienhold BJ.

PLoS One. 2012;7(11):e48325. doi: 10.1371/journal.pone.0048325. Epub 2012 Nov 2.


'Blooming' in the gut: how dysbiosis might contribute to pathogen evolution.

Stecher B, Maier L, Hardt WD.

Nat Rev Microbiol. 2013 Apr;11(4):277-84. doi: 10.1038/nrmicro2989. Epub 2013 Mar 11.


Long-term exposure to antibiotics has caused accumulation of resistance determinants in the gut microbiota of honeybees.

Tian B, Fadhil NH, Powell JE, Kwong WK, Moran NA.

MBio. 2012 Oct 30;3(6). pii: e00377-12. doi: 10.1128/mBio.00377-12.


Metagenomics and antibiotics.

Garmendia L, Hernandez A, Sanchez MB, Martinez JL.

Clin Microbiol Infect. 2012 Jul;18 Suppl 4:27-31. doi: 10.1111/j.1469-0691.2012.03868.x. Review.


Differential effects of antibiotic therapy on the structure and function of human gut microbiota.

Pérez-Cobas AE, Artacho A, Knecht H, Ferrús ML, Friedrichs A, Ott SJ, Moya A, Latorre A, Gosalbes MJ.

PLoS One. 2013 Nov 25;8(11):e80201. doi: 10.1371/journal.pone.0080201. eCollection 2013.


The human microbiome harbors a diverse reservoir of antibiotic resistance genes.

Sommer MO, Church GM, Dantas G.

Virulence. 2010 Jul-Aug;1(4):299-303. doi: 10.4161/viru.1.4.12010.


Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome.

Modi SR, Lee HH, Spina CS, Collins JJ.

Nature. 2013 Jul 11;499(7457):219-22. doi: 10.1038/nature12212. Epub 2013 Jun 9.


The shared antibiotic resistome of soil bacteria and human pathogens.

Forsberg KJ, Reyes A, Wang B, Selleck EM, Sommer MO, Dantas G.

Science. 2012 Aug 31;337(6098):1107-11. doi: 10.1126/science.1220761.


Metagenomic profiles and antibiotic resistance genes in gut microbiota of mice exposed to arsenic and iron.

Guo X, Liu S, Wang Z, Zhang XX, Li M, Wu B.

Chemosphere. 2014 Oct;112:1-8. doi: 10.1016/j.chemosphere.2014.03.068. Epub 2014 Apr 21.


Comparative fecal metagenomics unveils unique functional capacity of the swine gut.

Lamendella R, Domingo JW, Ghosh S, Martinson J, Oerther DB.

BMC Microbiol. 2011 May 15;11:103. doi: 10.1186/1471-2180-11-103.


Resident microbiota of the gypsy moth midgut harbors antibiotic resistance determinants.

Allen HK, Cloud-Hansen KA, Wolinski JM, Guan C, Greene S, Lu S, Boeyink M, Broderick NA, Raffa KF, Handelsman J.

DNA Cell Biol. 2009 Mar;28(3):109-17. doi: 10.1089/dna.2008.0812.


Metagenomics and development of the gut microbiota in infants.

Vallès Y, Gosalbes MJ, de Vries LE, Abellán JJ, Francino MP.

Clin Microbiol Infect. 2012 Jul;18 Suppl 4:21-6. doi: 10.1111/j.1469-0691.2012.03876.x.


The human gut resistome.

van Schaik W.

Philos Trans R Soc Lond B Biol Sci. 2015 Jun 5;370(1670):20140087. doi: 10.1098/rstb.2014.0087. Review.


The impact of antibiotics on the gut microbiota as revealed by high throughput DNA sequencing.

Cotter PD, Stanton C, Ross RP, Hill C.

Discov Med. 2012 Mar;13(70):193-9. Review.


Metagenomic analysis of virulence-associated and antibiotic resistance genes of microbes in rumen of Indian buffalo (Bubalus bubalis).

Singh KM, Jakhesara SJ, Koringa PG, Rank DN, Joshi CG.

Gene. 2012 Oct 10;507(2):146-51. doi: 10.1016/j.gene.2012.07.037. Epub 2012 Jul 28.

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