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Results: 1 to 20 of 119

1.

Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture.

Seth-Smith HM, Harris SR, Skilton RJ, Radebe FM, Golparian D, Shipitsyna E, Duy PT, Scott P, Cutcliffe LT, O'Neill C, Parmar S, Pitt R, Baker S, Ison CA, Marsh P, Jalal H, Lewis DA, Unemo M, Clarke IN, Parkhill J, Thomson NR.

Genome Res. 2013 May;23(5):855-66. doi: 10.1101/gr.150037.112. Epub 2013 Mar 22.

PMID:
23525359
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Generating whole bacterial genome sequences of low-abundance species from complex samples with IMS-MDA.

Seth-Smith HM, Harris SR, Scott P, Parmar S, Marsh P, Unemo M, Clarke IN, Parkhill J, Thomson NR.

Nat Protoc. 2013 Dec;8(12):2404-12. doi: 10.1038/nprot.2013.147. Epub 2013 Nov 7.

PMID:
24202554
[PubMed - in process]
3.

Evolution of Chlamydia trachomatis.

Clarke IN.

Ann N Y Acad Sci. 2011 Aug;1230:E11-8. doi: 10.1111/j.1749-6632.2011.06194.x. Review.

PMID:
22239534
[PubMed - indexed for MEDLINE]
4.

Sequences of multiple bacterial genomes and a Chlamydia trachomatis genotype from direct sequencing of DNA derived from a vaginal swab diagnostic specimen.

Andersson P, Klein M, Lilliebridge RA, Giffard PM.

Clin Microbiol Infect. 2013 Sep;19(9):E405-8. doi: 10.1111/1469-0691.12237. Epub 2013 May 7.

PMID:
23647919
[PubMed - indexed for MEDLINE]
5.

Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39.

Read TD, Brunham RC, Shen C, Gill SR, Heidelberg JF, White O, Hickey EK, Peterson J, Utterback T, Berry K, Bass S, Linher K, Weidman J, Khouri H, Craven B, Bowman C, Dodson R, Gwinn M, Nelson W, DeBoy R, Kolonay J, McClarty G, Salzberg SL, Eisen J, Fraser CM.

Nucleic Acids Res. 2000 Mar 15;28(6):1397-406.

PMID:
10684935
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing.

Harris SR, Clarke IN, Seth-Smith HM, Solomon AW, Cutcliffe LT, Marsh P, Skilton RJ, Holland MJ, Mabey D, Peeling RW, Lewis DA, Spratt BG, Unemo M, Persson K, Bjartling C, Brunham R, de Vries HJ, Morré SA, Speksnijder A, Bébéar CM, Clerc M, de Barbeyrac B, Parkhill J, Thomson NR.

Nat Genet. 2012 Mar 11;44(4):413-9, S1. doi: 10.1038/ng.2214.

PMID:
22406642
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Interplay of recombination and selection in the genomes of Chlamydia trachomatis.

Joseph SJ, Didelot X, Gandhi K, Dean D, Read TD.

Biol Direct. 2011 May 26;6:28. doi: 10.1186/1745-6150-6-28.

PMID:
21615910
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Hypervirulent Chlamydia trachomatis clinical strain is a recombinant between lymphogranuloma venereum (L(2)) and D lineages.

Somboonna N, Wan R, Ojcius DM, Pettengill MA, Joseph SJ, Chang A, Hsu R, Read TD, Dean D.

MBio. 2011 May 3;2(3):e00045-11. doi: 10.1128/mBio.00045-11. Print 2011.

PMID:
21540364
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Culture-independent sequence analysis of Chlamydia trachomatis in urogenital specimens identifies regions of recombination and in-patient sequence mutations.

Putman TE, Suchland RJ, Ivanovitch JD, Rockey DD.

Microbiology. 2013 Oct;159(Pt 10):2109-17. doi: 10.1099/mic.0.070029-0. Epub 2013 Jul 10.

PMID:
23842467
[PubMed - indexed for MEDLINE]
10.

Multi locus sequence typing of Chlamydiales: clonal groupings within the obligate intracellular bacteria Chlamydia trachomatis.

Pannekoek Y, Morelli G, Kusecek B, Morré SA, Ossewaarde JM, Langerak AA, van der Ende A.

BMC Microbiol. 2008 Feb 28;8:42. doi: 10.1186/1471-2180-8-42.

PMID:
18307777
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Generation of targeted Chlamydia trachomatis null mutants.

Kari L, Goheen MM, Randall LB, Taylor LD, Carlson JH, Whitmire WM, Virok D, Rajaram K, Endresz V, McClarty G, Nelson DE, Caldwell HD.

Proc Natl Acad Sci U S A. 2011 Apr 26;108(17):7189-93. doi: 10.1073/pnas.1102229108. Epub 2011 Apr 11.

PMID:
21482792
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Infection with a plasmid-free variant Chlamydia related to Chlamydia trachomatis identified by using multiple assays for nucleic acid detection.

An Q, Radcliffe G, Vassallo R, Buxton D, O'Brien WJ, Pelletier DA, Weisburg WG, Klinger JD, Olive DM.

J Clin Microbiol. 1992 Nov;30(11):2814-21.

PMID:
1280642
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Typing of Chlamydia trachomatis strains from urine samples by amplification and sequencing the major outer membrane protein gene (omp1).

Bandea CI, Kubota K, Brown TM, Kilmarx PH, Bhullar V, Yanpaisarn S, Chaisilwattana P, Siriwasin W, Black CM.

Sex Transm Infect. 2001 Dec;77(6):419-22.

PMID:
11714939
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Chlamydia trachomatis - the agent.

Cevenini R, Donati M, Sambri V.

Best Pract Res Clin Obstet Gynaecol. 2002 Dec;16(6):761-73. Review.

PMID:
12473280
[PubMed - indexed for MEDLINE]
15.

Molecular tests for human papillomavirus (HPV), Chlamydia trachomatis and Neisseria gonorrhoeae in liquid-based cytology specimen.

Lee SH, Vigliotti VS, Pappu S.

BMC Womens Health. 2009 Apr 9;9:8. doi: 10.1186/1472-6874-9-8.

PMID:
19358733
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Chlamydia trachomatis: small genome, big challenges.

Thomson NR, Clarke IN.

Future Microbiol. 2010 Apr;5(4):555-61. doi: 10.2217/fmb.10.31. Review.

PMID:
20353297
[PubMed - indexed for MEDLINE]
17.

Population genomics of Chlamydia trachomatis: insights on drift, selection, recombination, and population structure.

Joseph SJ, Didelot X, Rothschild J, de Vries HJ, Morré SA, Read TD, Dean D.

Mol Biol Evol. 2012 Dec;29(12):3933-46. doi: 10.1093/molbev/mss198. Epub 2012 Aug 13.

PMID:
22891032
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Comparative genomes of Chlamydia pneumoniae and C. trachomatis.

Kalman S, Mitchell W, Marathe R, Lammel C, Fan J, Hyman RW, Olinger L, Grimwood J, Davis RW, Stephens RS.

Nat Genet. 1999 Apr;21(4):385-9.

PMID:
10192388
[PubMed - indexed for MEDLINE]
19.

Evolution of Chlamydia trachomatis diversity occurs by widespread interstrain recombination involving hotspots.

Gomes JP, Bruno WJ, Nunes A, Santos N, Florindo C, Borrego MJ, Dean D.

Genome Res. 2007 Jan;17(1):50-60. Epub 2006 Nov 7.

PMID:
17090662
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Multilocus sequence typing of genital Chlamydia trachomatis in Norway reveals multiple new sequence types and a large genetic diversity.

Gravningen K, Christerson L, Furberg AS, Simonsen GS, Ödman K, Ståhlsten A, Herrmann B.

PLoS One. 2012;7(3):e34452. doi: 10.1371/journal.pone.0034452. Epub 2012 Mar 28.

PMID:
22470572
[PubMed - indexed for MEDLINE]
Free PMC Article

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