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Results: 1 to 20 of 148

1.

The effect of organelle discovery upon sub-cellular protein localisation.

Breckels LM, Gatto L, Christoforou A, Groen AJ, Lilley KS, Trotter MW.

J Proteomics. 2013 Aug 2;88:129-40. doi: 10.1016/j.jprot.2013.02.019. Epub 2013 Mar 21.

PMID:
23523639
[PubMed - indexed for MEDLINE]
2.

Improved sub-cellular resolution via simultaneous analysis of organelle proteomics data across varied experimental conditions.

Trotter MW, Sadowski PG, Dunkley TP, Groen AJ, Lilley KS.

Proteomics. 2010 Dec;10(23):4213-9. doi: 10.1002/pmic.201000359.

PMID:
21058340
[PubMed - indexed for MEDLINE]
3.

Methods of quantitative proteomics and their application to plant organelle characterization.

Lilley KS, Dupree P.

J Exp Bot. 2006;57(7):1493-9. Review.

PMID:
16617121
[PubMed - indexed for MEDLINE]
Free Article
4.

Identification of trans-golgi network proteins in Arabidopsis thaliana root tissue.

Groen AJ, Sancho-Andrés G, Breckels LM, Gatto L, Aniento F, Lilley KS.

J Proteome Res. 2014 Feb 7;13(2):763-76. doi: 10.1021/pr4008464. Epub 2014 Jan 17.

PMID:
24344820
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Mapping organelle proteins and protein complexes in Drosophila melanogaster.

Tan DJ, Dvinge H, Christoforou A, Bertone P, Martinez Arias A, Lilley KS.

J Proteome Res. 2009 Jun;8(6):2667-78. doi: 10.1021/pr800866n.

PMID:
19317464
[PubMed - indexed for MEDLINE]
6.

Proteomics methods for subcellular proteome analysis.

Drissi R, Dubois ML, Boisvert FM.

FEBS J. 2013 Nov;280(22):5626-34. doi: 10.1111/febs.12502. Epub 2013 Sep 20. Review.

PMID:
24034475
[PubMed - indexed for MEDLINE]
7.

An incremental approach to automated protein localisation.

Tscherepanow M, Jensen N, Kummert F.

BMC Bioinformatics. 2008 Oct 20;9:445. doi: 10.1186/1471-2105-9-445.

PMID:
18937856
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Quantitative proteomic analysis to profile dynamic changes in the spatial distribution of cellular proteins.

Yan W, Hwang D, Aebersold R.

Methods Mol Biol. 2008;432:389-401. doi: 10.1007/978-1-59745-028-7_26.

PMID:
18370032
[PubMed - indexed for MEDLINE]
9.

Localization of organelle proteins by isotope tagging (LOPIT).

Dunkley TP, Watson R, Griffin JL, Dupree P, Lilley KS.

Mol Cell Proteomics. 2004 Nov;3(11):1128-34. Epub 2004 Aug 4.

PMID:
15295017
[PubMed - indexed for MEDLINE]
Free Article
10.

Mass-spectrometry-based spatial proteomics data analysis using pRoloc and pRolocdata.

Gatto L, Breckels LM, Wieczorek S, Burger T, Lilley KS.

Bioinformatics. 2014 May 1;30(9):1322-4. doi: 10.1093/bioinformatics/btu013. Epub 2014 Jan 11.

PMID:
24413670
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Application of proteomic marker ensembles to subcellular organelle identification.

Andreyev AY, Shen Z, Guan Z, Ryan A, Fahy E, Subramaniam S, Raetz CR, Briggs S, Dennis EA.

Mol Cell Proteomics. 2010 Feb;9(2):388-402. doi: 10.1074/mcp.M900432-MCP200. Epub 2009 Nov 2.

PMID:
19884172
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Organelle DB: a cross-species database of protein localization and function.

Wiwatwattana N, Kumar A.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D598-604.

PMID:
15608270
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Identification of protein associations in organelles, using mass spectrometry-based proteomics.

Warnock DE, Fahy E, Taylor SW.

Mass Spectrom Rev. 2004 Jul-Aug;23(4):259-80. Review.

PMID:
15133837
[PubMed - indexed for MEDLINE]
14.

Qupe--a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments.

Albaum SP, Neuweger H, Fränzel B, Lange S, Mertens D, Trötschel C, Wolters D, Kalinowski J, Nattkemper TW, Goesmann A.

Bioinformatics. 2009 Dec 1;25(23):3128-34. doi: 10.1093/bioinformatics/btp568. Epub 2009 Oct 6.

PMID:
19808875
[PubMed - indexed for MEDLINE]
Free Article
15.

Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.

Brusniak MY, Bodenmiller B, Campbell D, Cooke K, Eddes J, Garbutt A, Lau H, Letarte S, Mueller LN, Sharma V, Vitek O, Zhang N, Aebersold R, Watts JD.

BMC Bioinformatics. 2008 Dec 16;9:542. doi: 10.1186/1471-2105-9-542.

PMID:
19087345
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Feature selection and nearest centroid classification for protein mass spectrometry.

Levner I.

BMC Bioinformatics. 2005 Mar 23;6:68.

PMID:
15788095
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Organelle proteomics experimental designs and analysis.

Gatto L, Vizcaíno JA, Hermjakob H, Huber W, Lilley KS.

Proteomics. 2010 Nov;10(22):3957-69. doi: 10.1002/pmic.201000244. Epub 2010 Nov 2. Review.

PMID:
21080489
[PubMed - indexed for MEDLINE]
18.

Arabidopsis proteomics: a simple and standardizable workflow for quantitative proteome characterization.

Rödiger A, Agne B, Baerenfaller K, Baginsky S.

Methods Mol Biol. 2014;1072:275-88. doi: 10.1007/978-1-62703-631-3_20.

PMID:
24136529
[PubMed - indexed for MEDLINE]
19.

Comparison of full versus partial metabolic labeling for quantitative proteomics analysis in Arabidopsis thaliana.

Huttlin EL, Hegeman AD, Harms AC, Sussman MR.

Mol Cell Proteomics. 2007 May;6(5):860-81. Epub 2007 Feb 9.

PMID:
17293592
[PubMed - indexed for MEDLINE]
Free Article
20.

Plant organelle proteomics.

Lilley KS, Dupree P.

Curr Opin Plant Biol. 2007 Dec;10(6):594-9. Epub 2007 Oct 2. Review.

PMID:
17913569
[PubMed - indexed for MEDLINE]

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