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Items: 1 to 20 of 120


Semantic querying of relational data for clinical intelligence: a semantic web services-based approach.

Riazanov A, Klein A, Shaban-Nejad A, Rose GW, Forster AJ, Buckeridge DL, Baker CJ.

J Biomed Semantics. 2013 Mar 13;4(1):9. doi: 10.1186/2041-1480-4-9.


Querying phenotype-genotype relationships on patient datasets using semantic web technology: the example of Cerebrotendinous xanthomatosis.

Taboada M, Martínez D, Pilo B, Jiménez-Escrig A, Robinson PN, Sobrido MJ.

BMC Med Inform Decis Mak. 2012 Jul 31;12:78. doi: 10.1186/1472-6947-12-78.


A semantic problem solving environment for integrative parasite research: identification of intervention targets for Trypanosoma cruzi.

Parikh PP, Minning TA, Nguyen V, Lalithsena S, Asiaee AH, Sahoo SS, Doshi P, Tarleton R, Sheth AP.

PLoS Negl Trop Dis. 2012 Jan;6(1):e1458. doi: 10.1371/journal.pntd.0001458. Epub 2012 Jan 17.


Clever generation of rich SPARQL queries from annotated relational schema: application to Semantic Web Service creation for biological databases.

Wollbrett J, Larmande P, de Lamotte F, Ruiz M.

BMC Bioinformatics. 2013 Apr 15;14:126. doi: 10.1186/1471-2105-14-126.


Semantic Web integration of Cheminformatics resources with the SADI framework.

Chepelev LL, Dumontier M.

J Cheminform. 2011 May 16;3:16. doi: 10.1186/1758-2946-3-16.


Federated ontology-based queries over cancer data.

González-Beltrán A, Tagger B, Finkelstein A.

BMC Bioinformatics. 2012 Jan 25;13 Suppl 1:S9. doi: 10.1186/1471-2105-13-S1-S9.


The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation.

Wilkinson MD, Vandervalk B, McCarthy L.

J Biomed Semantics. 2011 Oct 24;2(1):8. doi: 10.1186/2041-1480-2-8.


Executing SADI services in Galaxy.

Aranguren ME, González AR, Wilkinson MD.

J Biomed Semantics. 2014 Sep 22;5(1):42. doi: 10.1186/2041-1480-5-42. eCollection 2014.


The SADI Personal Health Lens: A Web Browser-Based System for Identifying Personally Relevant Drug Interactions.

Vandervalk B, McCarthy EL, Cruz-Toledo J, Klein A, Baker CJ, Dumontier M, Wilkinson MD.

JMIR Res Protoc. 2013 Apr 5;2(1):e14. doi: 10.2196/resprot.2315.


SSWAP: A Simple Semantic Web Architecture and Protocol for semantic web services.

Gessler DD, Schiltz GS, May GD, Avraham S, Town CD, Grant D, Nelson RT.

BMC Bioinformatics. 2009 Sep 23;10:309. doi: 10.1186/1471-2105-10-309.


Visually defining and querying consistent multi-granular clinical temporal abstractions.

Combi C, Oliboni B.

Artif Intell Med. 2012 Feb;54(2):75-101. doi: 10.1016/j.artmed.2011.10.004. Epub 2011 Dec 15.


SADI, SHARE, and the in silico scientific method.

Wilkinson MD, McCarthy L, Vandervalk B, Withers D, Kawas E, Samadian S.

BMC Bioinformatics. 2010 Dec 21;11 Suppl 12:S7. doi: 10.1186/1471-2105-11-S12-S7.


Applications and methods utilizing the Simple Semantic Web Architecture and Protocol (SSWAP) for bioinformatics resource discovery and disparate data and service integration.

Nelson RT, Avraham S, Shoemaker RC, May GD, Ware D, Gessler DD.

BioData Min. 2010 Jun 4;3(1):3. doi: 10.1186/1756-0381-3-3.


Knowledge-level querying of temporal patterns in clinical research systems.

O'Connor MJ, Shankar RD, Parrish DB, Das AK.

Stud Health Technol Inform. 2007;129(Pt 1):311-5.


Reasoning with bio-ontologies: using relational closure rules to enable practical querying.

Blondé W, Mironov V, Venkatesan A, Antezana E, De Baets B, Kuiper M.

Bioinformatics. 2011 Jun 1;27(11):1562-8. doi: 10.1093/bioinformatics/btr164. Epub 2011 Apr 5.


A journey to Semantic Web query federation in the life sciences.

Cheung KH, Frost HR, Marshall MS, Prud'hommeaux E, Samwald M, Zhao J, Paschke A.

BMC Bioinformatics. 2009 Oct 1;10 Suppl 10:S10. doi: 10.1186/1471-2105-10-S10-S10.


Towards Semantic e-Science for Traditional Chinese Medicine.

Chen H, Mao Y, Zheng X, Cui M, Feng Y, Deng S, Yin A, Zhou C, Tang J, Jiang X, Wu Z.

BMC Bioinformatics. 2007 May 9;8 Suppl 3:S6. Review.


GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations.

Xu Q, Shi Y, Lu Q, Zhang G, Luo Q, Li Y.

BMC Bioinformatics. 2008;9 Suppl 1:S6. doi: 10.1186/1471-2105-9-S1-S6.


Prototype semantic infrastructure for automated small molecule classification and annotation in lipidomics.

Chepelev LL, Riazanov A, Kouznetsov A, Low HS, Dumontier M, Baker CJ.

BMC Bioinformatics. 2011 Jul 26;12:303. doi: 10.1186/1471-2105-12-303.


AlzPharm: integration of neurodegeneration data using RDF.

Lam HY, Marenco L, Clark T, Gao Y, Kinoshita J, Shepherd G, Miller P, Wu E, Wong GT, Liu N, Crasto C, Morse T, Stephens S, Cheung KH.

BMC Bioinformatics. 2007 May 9;8 Suppl 3:S4.

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