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Items: 1 to 20 of 229


Deep sequencing for de novo construction of a marine fish (Sparus aurata) transcriptome database with a large coverage of protein-coding transcripts.

Calduch-Giner JA, Bermejo-Nogales A, Benedito-Palos L, Estensoro I, Ballester-Lozano G, Sitjà-Bobadilla A, Pérez-Sánchez J.

BMC Genomics. 2013 Mar 15;14:178. doi: 10.1186/1471-2164-14-178.


Fast skeletal muscle transcriptome of the gilthead sea bream (Sparus aurata) determined by next generation sequencing.

Garcia de la Serrana D, Estévez A, Andree K, Johnston IA.

BMC Genomics. 2012 May 11;13:181. doi: 10.1186/1471-2164-13-181.


Molecular characterization and expression analysis of six peroxiredoxin paralogous genes in gilthead sea bream (Sparus aurata): insights from fish exposed to dietary, pathogen and confinement stressors.

Pérez-Sánchez J, Bermejo-Nogales A, Calduch-Giner JA, Kaushik S, Sitjà-Bobadilla A.

Fish Shellfish Immunol. 2011 Aug;31(2):294-302. doi: 10.1016/j.fsi.2011.05.015. Epub 2011 May 27.


A Comparative BAC map for the gilthead sea bream (Sparus aurata L.).

Kuhl H, Sarropoulou E, Tine M, Kotoulas G, Magoulas A, Reinhardt R.

J Biomed Biotechnol. 2011;2011:329025. doi: 10.1155/2011/329025. Epub 2010 Oct 13.


Transcriptome analysis and SSR/SNP markers information of the blunt snout bream (Megalobrama amblycephala).

Gao Z, Luo W, Liu H, Zeng C, Liu X, Yi S, Wang W.

PLoS One. 2012;7(8):e42637. doi: 10.1371/journal.pone.0042637. Epub 2012 Aug 6.


Development and validation of a gene expression oligo microarray for the gilthead sea bream (Sparus aurata).

Ferraresso S, Vitulo N, Mininni AN, Romualdi C, Cardazzo B, Negrisolo E, Reinhardt R, Canario AV, Patarnello T, Bargelloni L.

BMC Genomics. 2008 Dec 3;9:580. doi: 10.1186/1471-2164-9-580.


Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote.

Liu S, Zhang Y, Zhou Z, Waldbieser G, Sun F, Lu J, Zhang J, Jiang Y, Zhang H, Wang X, Rajendran KV, Khoo L, Kucuktas H, Peatman E, Liu Z.

BMC Genomics. 2012 Nov 5;13:595. doi: 10.1186/1471-2164-13-595.


Gilthead sea bream (Sparus auratus) and European sea bass (Dicentrarchus labrax) expressed sequence tags: Characterization, tissue-specific expression and gene markers.

Louro B, Passos AL, Souche EL, Tsigenopoulos C, Beck A, Lagnel J, Bonhomme F, Cancela L, Cerdà J, Clark MS, Lubzens E, Magoulas A, Planas JV, Volckaert FA, Reinhardt R, Canario AV.

Mar Genomics. 2010 Sep-Dec;3(3-4):179-91. doi: 10.1016/j.margen.2010.09.005. Epub 2010 Oct 8.


In silico mining and characterization of simple sequence repeats from gilthead sea bream (Sparus aurata) expressed sequence tags (EST-SSRs); PCR amplification, polymorphism evaluation and multiplexing and cross-species assays.

Vogiatzi E, Lagnel J, Pakaki V, Louro B, Canario AV, Reinhardt R, Kotoulas G, Magoulas A, Tsigenopoulos CS.

Mar Genomics. 2011 Jun;4(2):83-91. doi: 10.1016/j.margen.2011.01.003. Epub 2011 Feb 5.


A gene-based radiation hybrid map of the gilthead sea bream Sparus aurata refines and exploits conserved synteny with Tetraodon nigroviridis.

Sarropoulou E, Franch R, Louro B, Power DM, Bargelloni L, Magoulas A, Senger F, Tsalavouta M, Patarnello T, Galibert F, Kotoulas G, Geisler R.

BMC Genomics. 2007 Feb 7;8:44.


Characterization of 954 bovine full-CDS cDNA sequences.

Harhay GP, Sonstegard TS, Keele JW, Heaton MP, Clawson ML, Snelling WM, Wiedmann RT, Van Tassell CP, Smith TP.

BMC Genomics. 2005 Nov 23;6:166.


Tissue-specific gene expression and functional regulation of uncoupling protein 2 (UCP2) by hypoxia and nutrient availability in gilthead sea bream (Sparus aurata): implications on the physiological significance of UCP1-3 variants.

Bermejo-Nogales A, Calduch-Giner JA, Pérez-Sánchez J.

Fish Physiol Biochem. 2014 Jun;40(3):751-62. doi: 10.1007/s10695-013-9882-7. Epub 2013 Oct 24.


Use of microarray technology to assess the time course of liver stress response after confinement exposure in gilthead sea bream (Sparus aurata L.).

Calduch-Giner JA, Davey G, Saera-Vila A, Houeix B, Talbot A, Prunet P, Cairns MT, Pérez-Sánchez J.

BMC Genomics. 2010 Mar 22;11:193. doi: 10.1186/1471-2164-11-193.


High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus.

Bettencourt R, Pinheiro M, Egas C, Gomes P, Afonso M, Shank T, Santos RS.

BMC Genomics. 2010 Oct 11;11:559. doi: 10.1186/1471-2164-11-559.


Developmental gene discovery in a hemimetabolous insect: de novo assembly and annotation of a transcriptome for the cricket Gryllus bimaculatus.

Zeng V, Ewen-Campen B, Horch HW, Roth S, Mito T, Extavour CG.

PLoS One. 2013 May 6;8(5):e61479. doi: 10.1371/journal.pone.0061479. Print 2013.


Mucins as diagnostic and prognostic biomarkers in a fish-parasite model: transcriptional and functional analysis.

Pérez-Sánchez J, Estensoro I, Redondo MJ, Calduch-Giner JA, Kaushik S, Sitjà-Bobadilla A.

PLoS One. 2013 Jun 12;8(6):e65457. doi: 10.1371/journal.pone.0065457. Print 2013.


Transcriptomic characterization of the larval stage in gilthead seabream (Sparus aurata) by 454 pyrosequencing.

Yúfera M, Halm S, Beltran S, Fusté B, Planas JV, Martínez-Rodríguez G.

Mar Biotechnol (NY). 2012 Aug;14(4):423-35. doi: 10.1007/s10126-011-9422-3. Epub 2011 Dec 14.


Duplication of growth hormone receptor (GHR) in fish genome: gene organization and transcriptional regulation of GHR type I and II in gilthead sea bream (Sparus aurata).

Saera-Vila A, Calduch-Giner JA, Pérez-Sánchez J.

Gen Comp Endocrinol. 2005 May 15;142(1-2):193-203. Epub 2005 Jan 11.


Molecular characterization of a cDNA from the gilthead sea bream (Sparus aurata) encoding a fish prion protein.

Favre-Krey L, Theodoridou M, Boukouvala E, Panagiotidis CH, Papadopoulos AI, Sklaviadis T, Krey G.

Comp Biochem Physiol B Biochem Mol Biol. 2007 Jul;147(3):566-73. Epub 2007 Mar 31.

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