Format
Sort by

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 468

1.

Make the most of your samples: Bayes factor estimators for high-dimensional models of sequence evolution.

Baele G, Lemey P, Vansteelandt S.

BMC Bioinformatics. 2013 Mar 6;14:85. doi: 10.1186/1471-2105-14-85.

2.

Species delimitation using Bayes factors: simulations and application to the Sceloporus scalaris species group (Squamata: Phrynosomatidae).

Grummer JA, Bryson RW Jr, Reeder TW.

Syst Biol. 2014 Mar;63(2):119-33. doi: 10.1093/sysbio/syt069. Epub 2013 Nov 20.

PMID:
24262383
3.

Improving marginal likelihood estimation for Bayesian phylogenetic model selection.

Xie W, Lewis PO, Fan Y, Kuo L, Chen MH.

Syst Biol. 2011 Mar;60(2):150-60. doi: 10.1093/sysbio/syq085. Epub 2010 Dec 27.

4.

Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty.

Baele G, Lemey P, Bedford T, Rambaut A, Suchard MA, Alekseyenko AV.

Mol Biol Evol. 2012 Sep;29(9):2157-67. doi: 10.1093/molbev/mss084. Epub 2012 Mar 7.

5.

Efficient context-dependent model building based on clustering posterior distributions for non-coding sequences.

Baele G, Peer YV, Vansteelandt S.

BMC Evol Biol. 2009 Apr 30;9:87. doi: 10.1186/1471-2148-9-87.

6.

Computing Bayes factors using thermodynamic integration.

Lartillot N, Philippe H.

Syst Biol. 2006 Apr;55(2):195-207.

PMID:
16522570
7.

Genealogical Working Distributions for Bayesian Model Testing with Phylogenetic Uncertainty.

Baele G, Lemey P, Suchard MA.

Syst Biol. 2016 Mar;65(2):250-64. doi: 10.1093/sysbio/syv083. Epub 2015 Nov 1.

PMID:
26526428
8.

Accurate model selection of relaxed molecular clocks in bayesian phylogenetics.

Baele G, Li WL, Drummond AJ, Suchard MA, Lemey P.

Mol Biol Evol. 2013 Feb;30(2):239-43. doi: 10.1093/molbev/mss243. Epub 2012 Oct 22.

9.

Bayesian evolutionary model testing in the phylogenomics era: matching model complexity with computational efficiency.

Baele G, Lemey P.

Bioinformatics. 2013 Aug 15;29(16):1970-9. doi: 10.1093/bioinformatics/btt340. Epub 2013 Jun 12.

10.

Bayesian coestimation of phylogeny and sequence alignment.

Lunter G, Miklós I, Drummond A, Jensen JL, Hein J.

BMC Bioinformatics. 2005 Apr 1;6:83.

11.

Modelling the ancestral sequence distribution and model frequencies in context-dependent models for primate non-coding sequences.

Baele G, Van de Peer Y, Vansteelandt S.

BMC Evol Biol. 2010 Aug 10;10:244. doi: 10.1186/1471-2148-10-244.

12.

Choosing among partition models in Bayesian phylogenetics.

Fan Y, Wu R, Chen MH, Kuo L, Lewis PO.

Mol Biol Evol. 2011 Jan;28(1):523-32. doi: 10.1093/molbev/msq224. Epub 2010 Aug 27.

13.

Bayesian model adequacy and choice in phylogenetics.

Bollback JP.

Mol Biol Evol. 2002 Jul;19(7):1171-80.

14.

Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design.

McCormack JE, Huang H, Knowles LL.

Syst Biol. 2009 Oct;58(5):501-8. doi: 10.1093/sysbio/syp045. Epub 2009 Aug 20.

PMID:
20525604
15.

Model averaging and Bayes factor calculation of relaxed molecular clocks in Bayesian phylogenetics.

Li WL, Drummond AJ.

Mol Biol Evol. 2012 Feb;29(2):751-61. doi: 10.1093/molbev/msr232. Epub 2011 Sep 22.

16.

Collaborative double robust targeted maximum likelihood estimation.

van der Laan MJ, Gruber S.

Int J Biostat. 2010 May 17;6(1):Article 17. doi: 10.2202/1557-4679.1181.

17.

Improved harmonic mean estimator for phylogenetic model evidence.

Arima S, Tardella L.

J Comput Biol. 2012 Apr;19(4):418-38. doi: 10.1089/cmb.2010.0139. Epub 2012 Mar 13.

PMID:
22414153
18.

Unified framework to evaluate panmixia and migration direction among multiple sampling locations.

Beerli P, Palczewski M.

Genetics. 2010 May;185(1):313-26. doi: 10.1534/genetics.109.112532. Epub 2010 Feb 22.

20.

Using models of nucleotide evolution to build phylogenetic trees.

Bos DH, Posada D.

Dev Comp Immunol. 2005;29(3):211-27. Review.

PMID:
15572070
Items per page

Supplemental Content

Write to the Help Desk