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Results: 1 to 20 of 101

1.

Simulation study of the role of the ribosomal exit tunnel on protein folding.

Chen C, Wang E, Liu P, Xiao Y.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Feb;87(2):022701. Epub 2013 Feb 4.

PMID:
23496542
[PubMed - indexed for MEDLINE]
2.

alpha-Helical nascent polypeptide chains visualized within distinct regions of the ribosomal exit tunnel.

Bhushan S, Gartmann M, Halic M, Armache JP, Jarasch A, Mielke T, Berninghausen O, Wilson DN, Beckmann R.

Nat Struct Mol Biol. 2010 Mar;17(3):313-7. doi: 10.1038/nsmb.1756. Epub 2010 Feb 7.

PMID:
20139981
[PubMed - indexed for MEDLINE]
3.

Protein translocation through a tunnel induces changes in folding kinetics: a lattice model study.

Contreras Martínez LM, Martínez-Veracoechea FJ, Pohkarel P, Stroock AD, Escobedo FA, DeLisa MP.

Biotechnol Bioeng. 2006 May 5;94(1):105-17.

PMID:
16528757
[PubMed - indexed for MEDLINE]
4.

Statics of the ribosomal exit tunnel: implications for cotranslational peptide folding, elongation regulation, and antibiotics binding.

Fulle S, Gohlke H.

J Mol Biol. 2009 Mar 27;387(2):502-17. doi: 10.1016/j.jmb.2009.01.037. Epub 2009 Jan 27.

PMID:
19356596
[PubMed - indexed for MEDLINE]
5.

Role of the ribosome in protein folding.

Das D, Das A, Samanta D, Ghosh J, Dasgupta S, Bhattacharya A, Basu A, Sanyal S, Das Gupta C.

Biotechnol J. 2008 Aug;3(8):999-1009. doi: 10.1002/biot.200800098.

PMID:
18702035
[PubMed - indexed for MEDLINE]
6.

Tertiary interactions within the ribosomal exit tunnel.

Kosolapov A, Deutsch C.

Nat Struct Mol Biol. 2009 Apr;16(4):405-11. doi: 10.1038/nsmb.1571. Epub 2009 Mar 8.

PMID:
19270700
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Transient tertiary structure formation within the ribosome exit port.

O'Brien EP, Hsu ST, Christodoulou J, Vendruscolo M, Dobson CM.

J Am Chem Soc. 2010 Dec 1;132(47):16928-37. doi: 10.1021/ja106530y. Epub 2010 Nov 9.

PMID:
21062068
[PubMed - indexed for MEDLINE]
8.

The ribosomal tunnel as a functional environment for nascent polypeptide folding and translational stalling.

Wilson DN, Beckmann R.

Curr Opin Struct Biol. 2011 Apr;21(2):274-82. doi: 10.1016/j.sbi.2011.01.007. Review.

PMID:
21316217
[PubMed - indexed for MEDLINE]
9.

Side-chain recognition and gating in the ribosome exit tunnel.

Petrone PM, Snow CD, Lucent D, Pande VS.

Proc Natl Acad Sci U S A. 2008 Oct 28;105(43):16549-54. doi: 10.1073/pnas.0801795105. Epub 2008 Oct 22.

PMID:
18946046
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Molecular simulations of cotranslational protein folding: fragment stabilities, folding cooperativity, and trapping in the ribosome.

Elcock AH.

PLoS Comput Biol. 2006 Jul 28;2(7):e98. Epub 2006 Jun 14.

PMID:
16789821
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Protein folding at the exit tunnel.

Fedyukina DV, Cavagnero S.

Annu Rev Biophys. 2011;40:337-59. doi: 10.1146/annurev-biophys-042910-155338. Review.

PMID:
21370971
[PubMed - indexed for MEDLINE]
12.

Mapping the electrostatic potential within the ribosomal exit tunnel.

Lu J, Kobertz WR, Deutsch C.

J Mol Biol. 2007 Aug 31;371(5):1378-91. Epub 2007 Jun 19.

PMID:
17631312
[PubMed - indexed for MEDLINE]
13.

Common structural transitions in explicit-solvent simulations of villin headpiece folding.

Freddolino PL, Schulten K.

Biophys J. 2009 Oct 21;97(8):2338-47. doi: 10.1016/j.bpj.2009.08.012.

PMID:
19843466
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Folding zones inside the ribosomal exit tunnel.

Lu J, Deutsch C.

Nat Struct Mol Biol. 2005 Dec;12(12):1123-9. Epub 2005 Nov 20.

PMID:
16299515
[PubMed - indexed for MEDLINE]
15.

A cradle for new proteins: trigger factor at the ribosome.

Maier T, Ferbitz L, Deuerling E, Ban N.

Curr Opin Struct Biol. 2005 Apr;15(2):204-12. Review.

PMID:
15837180
[PubMed - indexed for MEDLINE]
16.

Constraint counting on RNA structures: linking flexibility and function.

Fulle S, Gohlke H.

Methods. 2009 Oct;49(2):181-8. doi: 10.1016/j.ymeth.2009.04.004. Epub 2009 May 4. Review.

PMID:
19398009
[PubMed - indexed for MEDLINE]
17.

Non-bulk-like solvent behavior in the ribosome exit tunnel.

Lucent D, Snow CD, Aitken CE, Pande VS.

PLoS Comput Biol. 2010 Oct 21;6(10):e1000963. doi: 10.1371/journal.pcbi.1000963.

PMID:
20975935
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Ribosome exit tunnel can entropically stabilize alpha-helices.

Ziv G, Haran G, Thirumalai D.

Proc Natl Acad Sci U S A. 2005 Dec 27;102(52):18956-61. Epub 2005 Dec 15.

PMID:
16357202
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A folding zone in the ribosomal exit tunnel for Kv1.3 helix formation.

Tu LW, Deutsch C.

J Mol Biol. 2010 Mar 12;396(5):1346-60. doi: 10.1016/j.jmb.2009.12.059. Epub 2010 Jan 11.

PMID:
20060838
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A crevice adjoining the ribosome tunnel: hints for cotranslational folding.

Amit M, Berisio R, Baram D, Harms J, Bashan A, Yonath A.

FEBS Lett. 2005 Jun 13;579(15):3207-13. Epub 2005 Mar 23.

PMID:
15943964
[PubMed - indexed for MEDLINE]
Free Article

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