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Results: 1 to 20 of 94

1.

Genome-wide organization of eukaryotic preinitiation complex is influenced by nonconsensus protein-DNA binding.

Afek A, Lukatsky DB.

Biophys J. 2013 Mar 5;104(5):1107-15. doi: 10.1016/j.bpj.2013.01.038.

PMID:
23473494
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Nonspecific transcription-factor-DNA binding influences nucleosome occupancy in yeast.

Afek A, Sela I, Musa-Lempel N, Lukatsky DB.

Biophys J. 2011 Nov 16;101(10):2465-75. doi: 10.1016/j.bpj.2011.10.012. Epub 2011 Nov 15.

PMID:
22098745
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Genome-wide localization analysis of a complete set of Tafs reveals a specific effect of the taf1 mutation on Taf2 occupancy and provides indirect evidence for different TFIID conformations at different promoters.

Ohtsuki K, Kasahara K, Shirahige K, Kokubo T.

Nucleic Acids Res. 2010 Apr;38(6):1805-20. doi: 10.1093/nar/gkp1172. Epub 2009 Dec 21.

PMID:
20026583
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Sequential recruitment of SAGA and TFIID in a genomic response to DNA damage in Saccharomyces cerevisiae.

Ghosh S, Pugh BF.

Mol Cell Biol. 2011 Jan;31(1):190-202. doi: 10.1128/MCB.00317-10. Epub 2010 Oct 18.

PMID:
20956559
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Dissection of coactivator requirement at RNR3 reveals unexpected contributions from TFIID and SAGA.

Zhang H, Kruk JA, Reese JC.

J Biol Chem. 2008 Oct 10;283(41):27360-8. doi: 10.1074/jbc.M803831200. Epub 2008 Aug 5.

PMID:
18682387
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Nonspecific protein-DNA binding is widespread in the yeast genome.

Afek A, Lukatsky DB.

Biophys J. 2012 Apr 18;102(8):1881-8. doi: 10.1016/j.bpj.2012.03.044.

PMID:
22768944
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Genome-wide structure and organization of eukaryotic pre-initiation complexes.

Rhee HS, Pugh BF.

Nature. 2012 Jan 18;483(7389):295-301. doi: 10.1038/nature10799. Erratum in: Nature. 2012 Jul 5;487(7405):128.

PMID:
22258509
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Distinct role of Mediator tail module in regulation of SAGA-dependent, TATA-containing genes in yeast.

Ansari SA, Ganapathi M, Benschop JJ, Holstege FC, Wade JT, Morse RH.

EMBO J. 2012 Jan 4;31(1):44-57. doi: 10.1038/emboj.2011.362. Epub 2011 Oct 4.

PMID:
21971086
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Enhancement of TBP binding by activators and general transcription factors.

Li XY, Virbasius A, Zhu X, Green MR.

Nature. 1999 Jun 10;399(6736):605-9.

PMID:
10376604
[PubMed - indexed for MEDLINE]
10.

SAGA is an essential in vivo target of the yeast acidic activator Gal4p.

Bhaumik SR, Green MR.

Genes Dev. 2001 Aug 1;15(15):1935-45.

PMID:
11485988
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

An array of coactivators is required for optimal recruitment of TATA binding protein and RNA polymerase II by promoter-bound Gcn4p.

Qiu H, Hu C, Yoon S, Natarajan K, Swanson MJ, Hinnebusch AG.

Mol Cell Biol. 2004 May;24(10):4104-17.

PMID:
15121833
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Virtually unidirectional binding of TBP to the AdMLP TATA box within the quaternary complex with TFIIA and TFIIB.

Kays AR, Schepartz A.

Chem Biol. 2000 Aug;7(8):601-10.

PMID:
11048951
[PubMed - indexed for MEDLINE]
Free Article
13.

Yeast TATA-binding protein TFIID binds to TATA elements with both consensus and nonconsensus DNA sequences.

Hahn S, Buratowski S, Sharp PA, Guarente L.

Proc Natl Acad Sci U S A. 1989 Aug;86(15):5718-22.

PMID:
2569738
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Gal4-VP16 and Gal4-AH increase the orientational and axial specificity of TATA box recognition by TATA box binding protein.

Kays AR, Schepartz A.

Biochemistry. 2002 Mar 5;41(9):3147-55.

PMID:
11863454
[PubMed - indexed for MEDLINE]
15.
16.

Binding of TFIID to the CYC1 TATA boxes in yeast occurs independently of upstream activating sequences.

Chen J, Ding M, Pederson DS.

Proc Natl Acad Sci U S A. 1994 Dec 6;91(25):11909-13.

PMID:
7991556
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Positive and negative design for nonconsensus protein-DNA binding affinity in the vicinity of functional binding sites.

Afek A, Lukatsky DB.

Biophys J. 2013 Oct 1;105(7):1653-60. doi: 10.1016/j.bpj.2013.08.033.

PMID:
24094406
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Minimal components of the RNA polymerase II transcription apparatus determine the consensus TATA box.

Bjornsdottir G, Myers LC.

Nucleic Acids Res. 2008 May;36(9):2906-16. doi: 10.1093/nar/gkn130. Epub 2008 Apr 1.

PMID:
18385157
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genome-wide inference of transcription factor-DNA binding specificity in cell regeneration using a combination strategy.

Wang X, Zhang A, Ren W, Chen C, Dong J.

Chem Biol Drug Des. 2012 Nov;80(5):734-44. doi: 10.1111/cbdd.12013. Epub 2012 Sep 10.

PMID:
22863142
[PubMed - indexed for MEDLINE]
20.

Mot1 associates with transcriptionally active promoters and inhibits association of NC2 in Saccharomyces cerevisiae.

Geisberg JV, Moqtaderi Z, Kuras L, Struhl K.

Mol Cell Biol. 2002 Dec;22(23):8122-34.

PMID:
12417716
[PubMed - indexed for MEDLINE]
Free PMC Article

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