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Items: 1 to 20 of 145

1.

Learning protein multi-view features in complex space.

Yu DJ, Hu J, Wu XW, Shen HB, Chen J, Tang ZM, Yang J, Yang JY.

Amino Acids. 2013 May;44(5):1365-79. doi: 10.1007/s00726-013-1472-6. Epub 2013 Feb 28.

PMID:
23456487
2.

Enhancing membrane protein subcellular localization prediction by parallel fusion of multi-view features.

Yu D, Wu X, Shen H, Yang J, Tang Z, Qi Y, Yang J.

IEEE Trans Nanobioscience. 2012 Dec;11(4):375-85. doi: 10.1109/TNB.2012.2208473. Epub 2012 Aug 3.

PMID:
22875262
3.

SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition.

Melvin I, Ie E, Kuang R, Weston J, Stafford WN, Leslie C.

BMC Bioinformatics. 2007 May 22;8 Suppl 4:S2.

4.

Prediction of protein structural classes for low-homology sequences based on predicted secondary structure.

Yang JY, Peng ZL, Chen X.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S9. doi: 10.1186/1471-2105-11-S1-S9.

5.

APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility.

Xia JF, Zhao XM, Song J, Huang DS.

BMC Bioinformatics. 2010 Apr 8;11:174. doi: 10.1186/1471-2105-11-174.

6.

Enhancing protein-vitamin binding residues prediction by multiple heterogeneous subspace SVMs ensemble.

Yu DJ, Hu J, Yan H, Yang XB, Yang JY, Shen HB.

BMC Bioinformatics. 2014 Sep 5;15:297. doi: 10.1186/1471-2105-15-297.

7.

Multi label learning for prediction of human protein subcellular localizations.

Zhu L, Yang J, Shen HB.

Protein J. 2009 Dec;28(9-10):384-90. doi: 10.1007/s10930-009-9205-0.

PMID:
19806439
8.

Large-scale prediction of human protein-protein interactions from amino acid sequence based on latent topic features.

Pan XY, Zhang YN, Shen HB.

J Proteome Res. 2010 Oct 1;9(10):4992-5001. doi: 10.1021/pr100618t.

PMID:
20698572
9.

Protein structure and fold prediction using Tree-Augmented naïve Bayesian classifier.

Chinnasamy A, Sung WK, Mittal A.

J Bioinform Comput Biol. 2005 Aug;3(4):803-19.

PMID:
16078362
10.

PredCSF: an integrated feature-based approach for predicting conotoxin superfamily.

Fan YX, Song J, Shen HB, Kong X.

Protein Pept Lett. 2011 Mar;18(3):261-7.

PMID:
20955172
11.
12.

HYPROSP II--a knowledge-based hybrid method for protein secondary structure prediction based on local prediction confidence.

Lin HN, Chang JM, Wu KP, Sung TY, Hsu WL.

Bioinformatics. 2005 Aug 1;21(15):3227-33. Epub 2005 Jun 2.

13.

Fold prediction problem: the application of new physical and physicochemical-based features.

Dehzangi A, Phon-Amnuaisuk S.

Protein Pept Lett. 2011 Feb;18(2):174-85.

PMID:
21054271
14.

SCPRED: accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences.

Kurgan L, Cios K, Chen K.

BMC Bioinformatics. 2008 May 1;9:226. doi: 10.1186/1471-2105-9-226.

15.

Computer-assisted lip diagnosis on Traditional Chinese Medicine using multi-class support vector machines.

Li F, Zhao C, Xia Z, Wang Y, Zhou X, Li GZ.

BMC Complement Altern Med. 2012 Aug 16;12:127. doi: 10.1186/1472-6882-12-127.

16.

Two multi-classification strategies used on SVM to predict protein structural classes by using auto covariance.

Wu J, Li YZ, Li ML, Yu LZ.

Interdiscip Sci. 2009 Dec;1(4):315-9. doi: 10.1007/s12539-009-0066-1. Epub 2009 Nov 14.

PMID:
20640811
17.

SOMRuler: a novel interpretable transmembrane helices predictor.

Yu D, Shen H, Yang J.

IEEE Trans Nanobioscience. 2011 Jun;10(2):121-9. doi: 10.1109/TNB.2011.2160730. Epub 2011 Jul 7.

PMID:
21742571
18.

Probabilistic multi-class multi-kernel learning: on protein fold recognition and remote homology detection.

Damoulas T, Girolami MA.

Bioinformatics. 2008 May 15;24(10):1264-70. doi: 10.1093/bioinformatics/btn112. Epub 2008 Mar 31.

19.

Predicting the state of cysteines based on sequence information.

Guang X, Guo Y, Xiao J, Wang X, Sun J, Xiong W, Li M.

J Theor Biol. 2010 Dec 7;267(3):312-8. doi: 10.1016/j.jtbi.2010.09.002. Epub 2010 Sep 6.

PMID:
20826168
20.

SOMPNN: an efficient non-parametric model for predicting transmembrane helices.

Yu DJ, Shen HB, Yang JY.

Amino Acids. 2012 Jun;42(6):2195-205. doi: 10.1007/s00726-011-0959-2. Epub 2011 Jun 22.

PMID:
21695537
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