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Items: 1 to 20 of 145

1.

Tapping the promise of genomics in species with complex, nonmodel genomes.

Hirsch CN, Buell CR.

Annu Rev Plant Biol. 2013;64:89-110. doi: 10.1146/annurev-arplant-050312-120237. Epub 2013 Feb 6. Review.

PMID:
23451780
2.

Advances in plant genome sequencing.

Hamilton JP, Buell CR.

Plant J. 2012 Apr;70(1):177-90. doi: 10.1111/j.1365-313X.2012.04894.x. Review.

PMID:
22449051
3.

Genomic approaches for interrogating the biochemistry of medicinal plant species.

Góngora-Castillo E, Fedewa G, Yeo Y, Chappell J, DellaPenna D, Buell CR.

Methods Enzymol. 2012;517:139-59. doi: 10.1016/B978-0-12-404634-4.00007-3.

4.

Exploring giant plant genomes with next-generation sequencing technology.

Kelly LJ, Leitch IJ.

Chromosome Res. 2011 Oct;19(7):939-53. doi: 10.1007/s10577-011-9246-z. Review.

PMID:
21987187
5.

Comparative sequencing of plant genomes: choices to make.

Jackson S, Rounsley S, Purugganan M.

Plant Cell. 2006 May;18(5):1100-4. No abstract available.

6.

Accessing complex crop genomes with next-generation sequencing.

Edwards D, Batley J, Snowdon RJ.

Theor Appl Genet. 2013 Jan;126(1):1-11. doi: 10.1007/s00122-012-1964-x. Epub 2012 Sep 5. Review.

PMID:
22948437
7.

Bioinformatics challenges in de novo transcriptome assembly using short read sequences in the absence of a reference genome sequence.

Góngora-Castillo E, Buell CR.

Nat Prod Rep. 2013 Apr;30(4):490-500. doi: 10.1039/c3np20099j. Review.

PMID:
23377493
8.

Decoding plant and animal genome plasticity from differential paleo-evolutionary patterns and processes.

Murat F, Van de Peer Y, Salse J.

Genome Biol Evol. 2012;4(9):917-28. doi: 10.1093/gbe/evs066. Epub 2012 Jul 24.

9.

Reference-free comparative genomics of 174 chloroplasts.

Kua CS, Ruan J, Harting J, Ye CX, Helmus MR, Yu J, Cannon CH.

PLoS One. 2012;7(11):e48995. doi: 10.1371/journal.pone.0048995. Epub 2012 Nov 20.

10.

Next-generation sequencing and genome evolution in allopolyploids.

Buggs RJ, Renny-Byfield S, Chester M, Jordon-Thaden IE, Viccini LF, Chamala S, Leitch AR, Schnable PS, Barbazuk WB, Soltis PS, Soltis DE.

Am J Bot. 2012 Feb;99(2):372-82. doi: 10.3732/ajb.1100395. Epub 2012 Jan 20. Review.

11.

Dissecting plant genomes with the PLAZA comparative genomics platform.

Van Bel M, Proost S, Wischnitzki E, Movahedi S, Scheerlinck C, Van de Peer Y, Vandepoele K.

Plant Physiol. 2012 Feb;158(2):590-600. doi: 10.1104/pp.111.189514. Epub 2011 Dec 23.

12.

PLAZA: a comparative genomics resource to study gene and genome evolution in plants.

Proost S, Van Bel M, Sterck L, Billiau K, Van Parys T, Van de Peer Y, Vandepoele K.

Plant Cell. 2009 Dec;21(12):3718-31. doi: 10.1105/tpc.109.071506. Epub 2009 Dec 29.

13.

Floral gene resources from basal angiosperms for comparative genomics research.

Albert VA, Soltis DE, Carlson JE, Farmerie WG, Wall PK, Ilut DC, Solow TM, Mueller LA, Landherr LL, Hu Y, Buzgo M, Kim S, Yoo MJ, Frohlich MW, Perl-Treves R, Schlarbaum SE, Bliss BJ, Zhang X, Tanksley SD, Oppenheimer DG, Soltis PS, Ma H, DePamphilis CW, Leebens-Mack JH.

BMC Plant Biol. 2005 Mar 30;5:5.

14.

Palaeogenomics of plants: synteny-based modelling of extinct ancestors.

Abrouk M, Murat F, Pont C, Messing J, Jackson S, Faraut T, Tannier E, Plomion C, Cooke R, Feuillet C, Salse J.

Trends Plant Sci. 2010 Sep;15(9):479-87. doi: 10.1016/j.tplants.2010.06.001. Epub 2010 Jul 17.

PMID:
20638891
15.

Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus.

Raubeson LA, Peery R, Chumley TW, Dziubek C, Fourcade HM, Boore JL, Jansen RK.

BMC Genomics. 2007 Jun 15;8:174.

16.

Plant genomics: present state and a perspective on future developments.

Rafalski JA.

Brief Funct Genomic Proteomic. 2002 Feb;1(1):80-94.

17.

Screening synteny blocks in pairwise genome comparisons through integer programming.

Tang H, Lyons E, Pedersen B, Schnable JC, Paterson AH, Freeling M.

BMC Bioinformatics. 2011 Apr 18;12:102. doi: 10.1186/1471-2105-12-102.

18.

Plant evolutionary genomics.

Mitchell-Olds T, Clauss MJ.

Curr Opin Plant Biol. 2002 Feb;5(1):74-9. Review.

PMID:
11788312
19.

Targeted enrichment strategies for next-generation plant biology.

Cronn R, Knaus BJ, Liston A, Maughan PJ, Parks M, Syring JV, Udall J.

Am J Bot. 2012 Feb;99(2):291-311. doi: 10.3732/ajb.1100356. Epub 2012 Feb 6.

20.

Novel genomes and genome constitutions identified by GISH and 5S rDNA and knotted1 genomic sequences in the genus Setaria.

Zhao M, Zhi H, Doust AN, Li W, Wang Y, Li H, Jia G, Wang Y, Zhang N, Diao X.

BMC Genomics. 2013 Apr 11;14:244. doi: 10.1186/1471-2164-14-244.

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