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Items: 1 to 20 of 99

1.

Epigenetic epistatic interactions constrain the evolution of gene expression.

Park S, Lehner B.

Mol Syst Biol. 2013;9:645. doi: 10.1038/msb.2013.2.

2.

The extensive and condition-dependent nature of epistasis among whole-genome duplicates in yeast.

Musso G, Costanzo M, Huangfu M, Smith AM, Paw J, San Luis BJ, Boone C, Giaever G, Nislow C, Emili A, Zhang Z.

Genome Res. 2008 Jul;18(7):1092-9. doi: 10.1101/gr.076174.108. Epub 2008 May 7.

3.

Variance in epistasis links gene regulation and evolutionary rate in the yeast genetic interaction network.

Fierst JL, Phillips PC.

Genome Biol Evol. 2012;4(11):1080-7. doi: 10.1093/gbe/evs083.

4.

Histone modification pattern evolution after yeast gene duplication.

Zou Y, Su Z, Huang W, Gu X.

BMC Evol Biol. 2012 Jul 9;12:111. doi: 10.1186/1471-2148-12-111.

5.

Growth of novel epistatic interactions by gene duplication.

Jiang H, Xu L, Gu Z.

Genome Biol Evol. 2011;3:295-301. doi: 10.1093/gbe/evr016. Epub 2011 Mar 14.

6.

Dynamic epistasis under varying environmental perturbations.

Barker B, Xu L, Gu Z.

PLoS One. 2015 Jan 27;10(1):e0114911. doi: 10.1371/journal.pone.0114911. eCollection 2015.

7.

Long-term adaptation of epistatic genetic networks.

Yukilevich R, Lachance J, Aoki F, True JR.

Evolution. 2008 Sep;62(9):2215-35. doi: 10.1111/j.1558-5646.2008.00445.x. Epub 2008 Jun 28. Erratum in: Evolution. 2008 Nov;62(11):2951.

PMID:
18564374
8.

Epistatic interactions among metabolic genes depend upon environmental conditions.

Jagdishchandra Joshi C, Prasad A.

Mol Biosyst. 2014 Oct;10(10):2578-89. doi: 10.1039/c4mb00181h.

PMID:
25018101
9.

Network hubs buffer environmental variation in Saccharomyces cerevisiae.

Levy SF, Siegal ML.

PLoS Biol. 2008 Nov 4;6(11):e264. doi: 10.1371/journal.pbio.0060264.

10.

Chromatin regulation and gene centrality are essential for controlling fitness pleiotropy in yeast.

Zhou L, Ma X, Arbeitman MN, Sun F.

PLoS One. 2009 Nov 30;4(11):e8086. doi: 10.1371/journal.pone.0008086.

11.

The enrichment of TATA box and the scarcity of depleted proximal nucleosome in the promoters of duplicated yeast genes.

Kim Y, Lee JH, Babbitt GA.

J Mol Evol. 2010 Jan;70(1):69-73. doi: 10.1007/s00239-009-9309-3. Epub 2009 Dec 16.

PMID:
20013336
12.

Predominant gain of promoter TATA box after gene duplication associated with stress responses.

Zou Y, Huang W, Gu Z, Gu X.

Mol Biol Evol. 2011 Oct;28(10):2893-904. doi: 10.1093/molbev/msr116. Epub 2011 Apr 22.

13.

Expression profiles reveal parallel evolution of epistatic interactions involving the CRP regulon in Escherichia coli.

Cooper TF, Remold SK, Lenski RE, Schneider D.

PLoS Genet. 2008 Feb;4(2):e35. doi: 10.1371/journal.pgen.0040035.

14.

Identification of response-modulated genetic interactions by sensitivity-based epistatic analysis.

Batenchuk C, Tepliakova L, Kaern M.

BMC Genomics. 2010 Sep 10;11:493. doi: 10.1186/1471-2164-11-493.

15.

Gene clustering pattern, promoter architecture, and gene expression stability in eukaryotic genomes.

Woo YH, Li WH.

Proc Natl Acad Sci U S A. 2011 Feb 22;108(8):3306-11. doi: 10.1073/pnas.1100210108. Epub 2011 Feb 7.

16.

Evolution of coadaptation in a two-locus epistatic system.

Takahasi KR, Tajima F.

Evolution. 2005 Nov;59(11):2324-32.

PMID:
16396173
17.

Uncovering genetic regulatory network divergence between duplicate genes using yeast eQTL landscape.

Zou Y, Su Z, Yang J, Zeng Y, Gu X.

J Exp Zool B Mol Dev Evol. 2009 Nov 15;312(7):722-33. doi: 10.1002/jez.b.21290.

PMID:
19373876
18.

Conflict between noise and plasticity in yeast.

Lehner B.

PLoS Genet. 2010 Nov 4;6(11):e1001185. doi: 10.1371/journal.pgen.1001185.

19.

Array-based synthetic genetic screens to map bacterial pathways and functional networks in Escherichia coli.

Babu M, Gagarinova A, Emili A.

Methods Mol Biol. 2011;781:99-126. doi: 10.1007/978-1-61779-276-2_7.

PMID:
21877280
20.

Network of epistatic interactions within a yeast snoRNA.

Puchta O, Cseke B, Czaja H, Tollervey D, Sanguinetti G, Kudla G.

Science. 2016 May 13;352(6287):840-4. doi: 10.1126/science.aaf0965. Epub 2016 Apr 14. Erratum in: Science. 2016 May 6;352(6286). pii: aaf9112. doi: 10.1126/science.aaf9112.

PMID:
27080103
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