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Results: 1 to 20 of 146

1.

iSNO-PseAAC: predict cysteine S-nitrosylation sites in proteins by incorporating position specific amino acid propensity into pseudo amino acid composition.

Xu Y, Ding J, Wu LY, Chou KC.

PLoS One. 2013;8(2):e55844. doi: 10.1371/journal.pone.0055844. Epub 2013 Feb 7.

PMID:
23409062
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

iSNO-AAPair: incorporating amino acid pairwise coupling into PseAAC for predicting cysteine S-nitrosylation sites in proteins.

Xu Y, Shao XJ, Wu LY, Deng NY, Chou KC.

PeerJ. 2013 Oct 3;1:e171. doi: 10.7717/peerj.171. eCollection 2013.

PMID:
24109555
[PubMed]
Free PMC Article
3.

iHyd-PseAAC: predicting hydroxyproline and hydroxylysine in proteins by incorporating dipeptide position-specific propensity into pseudo amino acid composition.

Xu Y, Wen X, Shao XJ, Deng NY, Chou KC.

Int J Mol Sci. 2014 May 5;15(5):7594-610. doi: 10.3390/ijms15057594.

PMID:
24857907
[PubMed - in process]
Free PMC Article
4.

Prediction of protein S-nitrosylation sites based on adapted normal distribution bi-profile Bayes and Chou's pseudo amino acid composition.

Jia C, Lin X, Wang Z.

Int J Mol Sci. 2014 Jun 10;15(6):10410-23. doi: 10.3390/ijms150610410.

PMID:
24918295
[PubMed - in process]
Free PMC Article
5.

GPCR-2L: predicting G protein-coupled receptors and their types by hybridizing two different modes of pseudo amino acid compositions.

Xiao X, Wang P, Chou KC.

Mol Biosyst. 2011 Mar;7(3):911-9. doi: 10.1039/c0mb00170h. Epub 2010 Dec 23.

PMID:
21180772
[PubMed - indexed for MEDLINE]
6.

iNR-PhysChem: a sequence-based predictor for identifying nuclear receptors and their subfamilies via physical-chemical property matrix.

Xiao X, Wang P, Chou KC.

PLoS One. 2012;7(2):e30869. doi: 10.1371/journal.pone.0030869. Epub 2012 Feb 21.

PMID:
22363503
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

iDNA-Prot|dis: Identifying DNA-Binding Proteins by Incorporating Amino Acid Distance-Pairs and Reduced Alphabet Profile into the General Pseudo Amino Acid Composition.

Liu B, Xu J, Lan X, Xu R, Zhou J, Wang X, Chou KC.

PLoS One. 2014 Sep 3;9(9):e106691. doi: 10.1371/journal.pone.0106691. eCollection 2014.

PMID:
25184541
[PubMed - in process]
Free PMC Article
8.

Predict and analyze S-nitrosylation modification sites with the mRMR and IFS approaches.

Li BQ, Hu LL, Niu S, Cai YD, Chou KC.

J Proteomics. 2012 Feb 16;75(5):1654-65. doi: 10.1016/j.jprot.2011.12.003. Epub 2011 Dec 11.

PMID:
22178444
[PubMed - indexed for MEDLINE]
9.

GPS-SNO: computational prediction of protein S-nitrosylation sites with a modified GPS algorithm.

Xue Y, Liu Z, Gao X, Jin C, Wen L, Yao X, Ren J.

PLoS One. 2010 Jun 24;5(6):e11290. doi: 10.1371/journal.pone.0011290.

PMID:
20585580
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

An efficient support vector machine approach for identifying protein S-nitrosylation sites.

Li YX, Shao YH, Jing L, Deng NY.

Protein Pept Lett. 2011 Jun;18(6):573-87.

PMID:
21271979
[PubMed - indexed for MEDLINE]
11.

iCDI-PseFpt: identify the channel-drug interaction in cellular networking with PseAAC and molecular fingerprints.

Xiao X, Min JL, Wang P, Chou KC.

J Theor Biol. 2013 Nov 21;337:71-9. doi: 10.1016/j.jtbi.2013.08.013. Epub 2013 Aug 26.

PMID:
23988798
[PubMed - indexed for MEDLINE]
12.

Predicting secretory proteins of malaria parasite by incorporating sequence evolution information into pseudo amino acid composition via grey system model.

Lin WZ, Fang JA, Xiao X, Chou KC.

PLoS One. 2012;7(11):e49040. doi: 10.1371/journal.pone.0049040. Epub 2012 Nov 26.

PMID:
23189138
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Some remarks on protein attribute prediction and pseudo amino acid composition.

Chou KC.

J Theor Biol. 2011 Mar 21;273(1):236-47. doi: 10.1016/j.jtbi.2010.12.024. Epub 2010 Dec 17.

PMID:
21168420
[PubMed - indexed for MEDLINE]
14.

iHSP-PseRAAAC: Identifying the heat shock protein families using pseudo reduced amino acid alphabet composition.

Feng PM, Chen W, Lin H, Chou KC.

Anal Biochem. 2013 Nov 1;442(1):118-25. doi: 10.1016/j.ab.2013.05.024. Epub 2013 Jun 10.

PMID:
23756733
[PubMed - in process]
15.

PseAAC-Builder: a cross-platform stand-alone program for generating various special Chou's pseudo-amino acid compositions.

Du P, Wang X, Xu C, Gao Y.

Anal Biochem. 2012 Jun 15;425(2):117-9. doi: 10.1016/j.ab.2012.03.015. Epub 2012 Mar 27.

PMID:
22459120
[PubMed - indexed for MEDLINE]
16.

iNitro-Tyr: Prediction of Nitrotyrosine Sites in Proteins with General Pseudo Amino Acid Composition.

Xu Y, Wen X, Wen LS, Wu LY, Deng NY, Chou KC.

PLoS One. 2014 Aug 14;9(8):e105018. doi: 10.1371/journal.pone.0105018. eCollection 2014.

PMID:
25121969
[PubMed - in process]
Free PMC Article
17.

iDNA-Prot: identification of DNA binding proteins using random forest with grey model.

Lin WZ, Fang JA, Xiao X, Chou KC.

PLoS One. 2011;6(9):e24756. doi: 10.1371/journal.pone.0024756. Epub 2011 Sep 15.

PMID:
21935457
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

iTIS-PseTNC: A sequence-based predictor for identifying translation initiation site in human genes using pseudo trinucleotide composition.

Chen W, Feng PM, Deng EZ, Lin H, Chou KC.

Anal Biochem. 2014 Oct 1;462:76-83. doi: 10.1016/j.ab.2014.06.022. Epub 2014 Jul 10.

PMID:
25016190
[PubMed - in process]
19.

Prediction and analysis of protein palmitoylation sites.

Hu LL, Wan SB, Niu S, Shi XH, Li HP, Cai YD, Chou KC.

Biochimie. 2011 Mar;93(3):489-96. doi: 10.1016/j.biochi.2010.10.022. Epub 2010 Nov 12.

PMID:
21075167
[PubMed - indexed for MEDLINE]
20.

iGPCR-drug: a web server for predicting interaction between GPCRs and drugs in cellular networking.

Xiao X, Min JL, Wang P, Chou KC.

PLoS One. 2013 Aug 27;8(8):e72234. doi: 10.1371/journal.pone.0072234. eCollection 2013.

PMID:
24015221
[PubMed - indexed for MEDLINE]
Free PMC Article

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