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Similar articles for PubMed (Select 23408875)

1.

Getting more out of biomedical documents with GATE's full lifecycle open source text analytics.

Cunningham H, Tablan V, Roberts A, Bontcheva K.

PLoS Comput Biol. 2013;9(2):e1002854. doi: 10.1371/journal.pcbi.1002854. Epub 2013 Feb 7.

2.

Overview of the BioCreative III Workshop.

Arighi CN, Lu Z, Krallinger M, Cohen KB, Wilbur WJ, Valencia A, Hirschman L, Wu CH.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S1. doi: 10.1186/1471-2105-12-S8-S1.

3.

Text mining.

Clegg AB, Shepherd AJ.

Methods Mol Biol. 2008;453:471-91. doi: 10.1007/978-1-60327-429-6_25.

PMID:
18712320
4.

BioCreative III interactive task: an overview.

Arighi CN, Roberts PM, Agarwal S, Bhattacharya S, Cesareni G, Chatr-Aryamontri A, Clematide S, Gaudet P, Giglio MG, Harrow I, Huala E, Krallinger M, Leser U, Li D, Liu F, Lu Z, Maltais LJ, Okazaki N, Perfetto L, Rinaldi F, Sætre R, Salgado D, Srinivasan P, Thomas PE, Toldo L, Hirschman L, Wu CH.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S4. doi: 10.1186/1471-2105-12-S8-S4.

5.

A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools.

Verspoor K, Cohen KB, Lanfranchi A, Warner C, Johnson HL, Roeder C, Choi JD, Funk C, Malenkiy Y, Eckert M, Xue N, Baumgartner WA Jr, Bada M, Palmer M, Hunter LE.

BMC Bioinformatics. 2012 Aug 17;13:207. doi: 10.1186/1471-2105-13-207.

6.

Text mining for traditional Chinese medical knowledge discovery: a survey.

Zhou X, Peng Y, Liu B.

J Biomed Inform. 2010 Aug;43(4):650-60. doi: 10.1016/j.jbi.2010.01.002. Epub 2010 Jan 13.

7.

Text-based knowledge discovery: search and mining of life-sciences documents.

Mack R, Hehenberger M.

Drug Discov Today. 2002 Jun 1;7(11):S89-98. Review. Erratum in: Drug Discov Today. 2002 Sep;7(17):889.

PMID:
12047886
8.

Argo: an integrative, interactive, text mining-based workbench supporting curation.

Rak R, Rowley A, Black W, Ananiadou S.

Database (Oxford). 2012 Mar 20;2012:bas010. doi: 10.1093/database/bas010. Print 2012.

9.

Mining the pharmacogenomics literature--a survey of the state of the art.

Hahn U, Cohen KB, Garten Y, Shah NH.

Brief Bioinform. 2012 Jul;13(4):460-94. doi: 10.1093/bib/bbs018.

10.

An architecture for biological information extraction and representation.

Vailaya A, Bluvas P, Kincaid R, Kuchinsky A, Creech M, Adler A.

Bioinformatics. 2005 Feb 15;21(4):430-8. Epub 2004 Dec 17.

11.

ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text.

Settles B.

Bioinformatics. 2005 Jul 15;21(14):3191-2. Epub 2005 Apr 28.

12.

@Note: a workbench for biomedical text mining.

Lourenço A, Carreira R, Carneiro S, Maia P, Glez-Peña D, Fdez-Riverola F, Ferreira EC, Rocha I, Rocha M.

J Biomed Inform. 2009 Aug;42(4):710-20. doi: 10.1016/j.jbi.2009.04.002. Epub 2009 Apr 22.

13.

Automated extraction and semantic analysis of mutation impacts from the biomedical literature.

Naderi N, Witte R.

BMC Genomics. 2012 Jun 18;13 Suppl 4:S10. doi: 10.1186/1471-2164-13-S4-S10.

14.

A survey on annotation tools for the biomedical literature.

Neves M, Leser U.

Brief Bioinform. 2014 Mar;15(2):327-40. doi: 10.1093/bib/bbs084. Epub 2012 Dec 18. Review.

PMID:
23255168
15.

Laying the groundwork for enterprise-wide medical language processing services: architecture and process.

Chen ES, Maloney FL, Shilmayster E, Goldberg HS.

AMIA Annu Symp Proc. 2009 Nov 14;2009:97-101.

16.

Filling the gaps between tools and users: a tool comparator, using protein-protein interaction as an example.

Kano Y, Nguyen N, Saetre R, Yoshida K, Miyao Y, Tsuruoka Y, Matsubayashi Y, Ananiadou S, Tsujii J.

Pac Symp Biocomput. 2008:616-27.

17.

Chapter 16: text mining for translational bioinformatics.

Cohen KB, Hunter LE.

PLoS Comput Biol. 2013 Apr;9(4):e1003044. doi: 10.1371/journal.pcbi.1003044. Epub 2013 Apr 25.

18.

BioC interoperability track overview.

Comeau DC, Batista-Navarro RT, Dai HJ, Doğan RI, Yepes AJ, Khare R, Lu Z, Marques H, Mattingly CJ, Neves M, Peng Y, Rak R, Rinaldi F, Tsai RT, Verspoor K, Wiegers TC, Wu CH, Wilbur WJ.

Database (Oxford). 2014 Jun 30;2014. pii: bau053. doi: 10.1093/database/bau053. Print 2014. Review.

19.

pubmed2ensembl: a resource for mining the biological literature on genes.

Baran J, Gerner M, Haeussler M, Nenadic G, Bergman CM.

PLoS One. 2011;6(9):e24716. doi: 10.1371/journal.pone.0024716. Epub 2011 Sep 29.

20.

A bioinformatics knowledge discovery in text application for grid computing.

Castellano M, Mastronardi G, Bellotti R, Tarricone G.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S23. doi: 10.1186/1471-2105-10-S6-S23.

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