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Results: 1 to 20 of 95

1.

Three independent determinants of protein evolutionary rate.

Choi SS, Hannenhalli S.

J Mol Evol. 2013 Mar;76(3):98-111. doi: 10.1007/s00239-013-9543-6. Epub 2013 Feb 12. Review.

PMID:
23400388
[PubMed - indexed for MEDLINE]
2.

Impacts of gene essentiality, expression pattern, and gene compactness on the evolutionary rate of mammalian proteins.

Liao BY, Scott NM, Zhang J.

Mol Biol Evol. 2006 Nov;23(11):2072-80. Epub 2006 Aug 3. Erratum in: Mol Biol Evol. 2007 Apr;24(4):1091.

PMID:
16887903
[PubMed - indexed for MEDLINE]
Free Article
3.

Why is the correlation between gene importance and gene evolutionary rate so weak?

Wang Z, Zhang J.

PLoS Genet. 2009 Jan;5(1):e1000329. doi: 10.1371/journal.pgen.1000329. Epub 2009 Jan 9.

PMID:
19132081
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Why proteins evolve at different rates: the functional hypothesis versus the mistranslation-induced protein misfolding hypothesis.

Park D, Choi SS.

FEBS Lett. 2009 Apr 2;583(7):1053-9. doi: 10.1016/j.febslet.2009.02.033. Epub 2009 Feb 28. Review. Retraction in: FEBS Lett. 2009 Sep 17;583(18):3108.

PMID:
19254718
[PubMed - indexed for MEDLINE]
Free Article
5.

Comparable contributions of structural-functional constraints and expression level to the rate of protein sequence evolution.

Wolf MY, Wolf YI, Koonin EV.

Biol Direct. 2008 Oct 7;3:40. doi: 10.1186/1745-6150-3-40.

PMID:
18840284
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Flagellated algae protein evolution suggests the prevalence of lineage-specific rules governing evolutionary rates of eukaryotic proteins.

Chang TY, Liao BY.

Genome Biol Evol. 2013;5(5):913-22. doi: 10.1093/gbe/evt055.

PMID:
23563973
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Significant impact of protein dispensability on the instantaneous rate of protein evolution.

Zhang J, He X.

Mol Biol Evol. 2005 Apr;22(4):1147-55. Epub 2005 Feb 2.

PMID:
15689524
[PubMed - indexed for MEDLINE]
Free Article
8.

Residue mutations and their impact on protein structure and function: detecting beneficial and pathogenic changes.

Studer RA, Dessailly BH, Orengo CA.

Biochem J. 2013 Feb 1;449(3):581-94. doi: 10.1042/BJ20121221. Review.

PMID:
23301657
[PubMed - indexed for MEDLINE]
9.

Multifunctionality dominantly determines the rate of human housekeeping and tissue specific interacting protein evolution.

Podder S, Mukhopadhyay P, Ghosh TC.

Gene. 2009 Jun 15;439(1-2):11-6. doi: 10.1016/j.gene.2009.03.005. Epub 2009 Mar 20.

PMID:
19306918
[PubMed - indexed for MEDLINE]
10.

Impact of extracellularity on the evolutionary rate of mammalian proteins.

Liao BY, Weng MP, Zhang J.

Genome Biol Evol. 2010 Jan 6;2:39-43. doi: 10.1093/gbe/evp058.

PMID:
20333223
[PubMed]
Free PMC Article
11.

Understanding protein evolutionary rate by integrating gene co-expression with protein interactions.

Pang K, Cheng C, Xuan Z, Sheng H, Ma X.

BMC Syst Biol. 2010 Dec 30;4:179. doi: 10.1186/1752-0509-4-179.

PMID:
21190591
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Unifying measures of gene function and evolution.

Wolf YI, Carmel L, Koonin EV.

Proc Biol Sci. 2006 Jun 22;273(1593):1507-15.

PMID:
16777745
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Contact density affects protein evolutionary rate from bacteria to animals.

Zhou T, Drummond DA, Wilke CO.

J Mol Evol. 2008 Apr;66(4):395-404. doi: 10.1007/s00239-008-9094-4. Epub 2008 Apr 1.

PMID:
18379715
[PubMed - indexed for MEDLINE]
14.

Protein conformational diversity correlates with evolutionary rate.

Javier Zea D, Miguel Monzon A, Fornasari MS, Marino-Buslje C, Parisi G.

Mol Biol Evol. 2013 Jul;30(7):1500-3. doi: 10.1093/molbev/mst065. Epub 2013 Apr 5.

PMID:
23564939
[PubMed - indexed for MEDLINE]
Free Article
15.

A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the Protein Data Bank.

Bastolla U, Porto M, Roman HE, Vendruscolo M.

BMC Evol Biol. 2006 May 31;6:43.

PMID:
16737532
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Conservation and topology of protein interaction networks under duplication-divergence evolution.

Evlampiev K, Isambert H.

Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):9863-8. doi: 10.1073/pnas.0804119105. Epub 2008 Jul 16.

PMID:
18632555
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Expression level, evolutionary rate, and the cost of expression.

Cherry JL.

Genome Biol Evol. 2010;2:757-69. doi: 10.1093/gbe/evq059. Epub 2010 Sep 30.

PMID:
20884723
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Systemic factors dominate mammal protein evolution.

Vinogradov AE.

Proc Biol Sci. 2010 May 7;277(1686):1403-8. doi: 10.1098/rspb.2009.1865. Epub 2010 Jan 6.

PMID:
20053642
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Conserved proteins are fragile.

Assis R, Kondrashov AS.

Mol Biol Evol. 2014 Feb;31(2):419-24. doi: 10.1093/molbev/mst217. Epub 2013 Nov 7.

PMID:
24202613
[PubMed - indexed for MEDLINE]
20.

Evolutionary rate depends on number of protein-protein interactions independently of gene expression level.

Fraser HB, Hirsh AE.

BMC Evol Biol. 2004 May 27;4:13.

PMID:
15165289
[PubMed - indexed for MEDLINE]
Free PMC Article

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