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Results: 1 to 20 of 99

1.

Role of ion valence in the submillisecond collapse and folding of a small RNA domain.

Pabit SA, Sutton JL, Chen H, Pollack L.

Biochemistry. 2013 Mar 5;52(9):1539-46. doi: 10.1021/bi3016636. Epub 2013 Feb 21.

PMID:
23398396
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Principles of RNA compaction: insights from the equilibrium folding pathway of the P4-P6 RNA domain in monovalent cations.

Takamoto K, Das R, He Q, Doniach S, Brenowitz M, Herschlag D, Chance MR.

J Mol Biol. 2004 Nov 5;343(5):1195-206.

PMID:
15491606
[PubMed - indexed for MEDLINE]
3.

Linkage of monovalent and divalent ion binding in the folding of the P4-P6 domain of the Tetrahymena ribozyme.

Uchida T, He Q, Ralston CY, Brenowitz M, Chance MR.

Biochemistry. 2002 May 7;41(18):5799-806.

PMID:
11980483
[PubMed - indexed for MEDLINE]
4.

Role of counterion condensation in folding of the Tetrahymena ribozyme. II. Counterion-dependence of folding kinetics.

Heilman-Miller SL, Pan J, Thirumalai D, Woodson SA.

J Mol Biol. 2001 May 25;309(1):57-68.

PMID:
11491301
[PubMed - indexed for MEDLINE]
5.

The fastest global events in RNA folding: electrostatic relaxation and tertiary collapse of the Tetrahymena ribozyme.

Das R, Kwok LW, Millett IS, Bai Y, Mills TT, Jacob J, Maskel GS, Seifert S, Mochrie SG, Thiyagarajan P, Doniach S, Pollack L, Herschlag D.

J Mol Biol. 2003 Sep 12;332(2):311-9.

PMID:
12948483
[PubMed - indexed for MEDLINE]
6.

Small angle X-ray scattering reveals a compact intermediate in RNA folding.

Russell R, Millett IS, Doniach S, Herschlag D.

Nat Struct Biol. 2000 May;7(5):367-70.

PMID:
10802731
[PubMed - indexed for MEDLINE]
7.

Low specificity of metal ion binding in the metal ion core of a folded RNA.

Travers KJ, Boyd N, Herschlag D.

RNA. 2007 Aug;13(8):1205-13. Epub 2007 Jul 6.

PMID:
17616553
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Folding mechanism of the Tetrahymena ribozyme P4-P6 domain.

Deras ML, Brenowitz M, Ralston CY, Chance MR, Woodson SA.

Biochemistry. 2000 Sep 12;39(36):10975-85.

PMID:
10998234
[PubMed - indexed for MEDLINE]
9.

Monovalent ion-mediated folding of the Tetrahymena thermophila ribozyme.

Shcherbakova I, Gupta S, Chance MR, Brenowitz M.

J Mol Biol. 2004 Oct 1;342(5):1431-42.

PMID:
15364572
[PubMed - indexed for MEDLINE]
10.

Metal ion dependence of cooperative collapse transitions in RNA.

Moghaddam S, Caliskan G, Chauhan S, Hyeon C, Briber RM, Thirumalai D, Woodson SA.

J Mol Biol. 2009 Oct 30;393(3):753-64. doi: 10.1016/j.jmb.2009.08.044. Epub 2009 Aug 25.

PMID:
19712681
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Counterion charge density determines the position and plasticity of RNA folding transition states.

Koculi E, Thirumalai D, Woodson SA.

J Mol Biol. 2006 Jun 2;359(2):446-54. Epub 2006 Mar 30.

PMID:
16626736
[PubMed - indexed for MEDLINE]
12.

Two major tertiary folding transitions of the Tetrahymena catalytic RNA.

Laggerbauer B, Murphy FL, Cech TR.

EMBO J. 1994 Jun 1;13(11):2669-76.

PMID:
8013466
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Enhanced specificity against misfolding in a thermostable mutant of the Tetrahymena ribozyme.

Wan Y, Russell R.

Biochemistry. 2011 Feb 8;50(5):864-74. doi: 10.1021/bi101467q. Epub 2011 Jan 11.

PMID:
21174447
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

An optimal Mg(2+) concentration for kinetic folding of the tetrahymena ribozyme.

Rook MS, Treiber DK, Williamson JR.

Proc Natl Acad Sci U S A. 1999 Oct 26;96(22):12471-6.

PMID:
10535946
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Hinge stiffness is a barrier to RNA folding.

Schlatterer JC, Kwok LW, Lamb JS, Park HY, Andresen K, Brenowitz M, Pollack L.

J Mol Biol. 2008 Jun 13;379(4):859-70. doi: 10.1016/j.jmb.2008.04.013. Epub 2008 Apr 10.

PMID:
18471829
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Monovalent cations mediate formation of native tertiary structure of the Tetrahymena thermophila ribozyme.

Takamoto K, He Q, Morris S, Chance MR, Brenowitz M.

Nat Struct Biol. 2002 Dec;9(12):928-33.

PMID:
12434149
[PubMed - indexed for MEDLINE]
17.

Multiple monovalent ion-dependent pathways for the folding of the L-21 Tetrahymena thermophila ribozyme.

Uchida T, Takamoto K, He Q, Chance MR, Brenowitz M.

J Mol Biol. 2003 Apr 25;328(2):463-78.

PMID:
12691754
[PubMed - indexed for MEDLINE]
18.

Structural basis of the enhanced stability of a mutant ribozyme domain and a detailed view of RNA--solvent interactions.

Juneau K, Podell E, Harrington DJ, Cech TR.

Structure. 2001 Mar 7;9(3):221-31.

PMID:
11286889
[PubMed - indexed for MEDLINE]
19.

Role of counterion condensation in folding of the Tetrahymena ribozyme. I. Equilibrium stabilization by cations.

Heilman-Miller SL, Thirumalai D, Woodson SA.

J Mol Biol. 2001 Mar 9;306(5):1157-66.

PMID:
11237624
[PubMed - indexed for MEDLINE]
20.

An early transition state for folding of the P4-P6 RNA domain.

Silverman SK, Cech TR.

RNA. 2001 Feb;7(2):161-6.

PMID:
11233973
[PubMed - indexed for MEDLINE]
Free PMC Article

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