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Results: 1 to 20 of 107

1.

Mapping of single-base differences between two DNA strands in a single molecule using holliday junction nanomechanics.

Brème C, Heslot F.

PLoS One. 2013;8(2):e55154. doi: 10.1371/journal.pone.0055154. Epub 2013 Feb 5.

PMID:
23393565
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Effect of single-strand break on branch migration and folding dynamics of Holliday junctions.

Palets D, Lushnikov AY, Karymov MA, Lyubchenko YL.

Biophys J. 2010 Sep 22;99(6):1916-24. doi: 10.1016/j.bpj.2010.07.011.

PMID:
20858437
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

The stacked-X DNA Holliday junction and protein recognition.

Khuu PA, Voth AR, Hays FA, Ho PS.

J Mol Recognit. 2006 May-Jun;19(3):234-42. Review.

PMID:
16575941
[PubMed - indexed for MEDLINE]
4.

Holliday junction dynamics and branch migration: single-molecule analysis.

Karymov M, Daniel D, Sankey OF, Lyubchenko YL.

Proc Natl Acad Sci U S A. 2005 Jun 7;102(23):8186-91. Epub 2005 May 25.

PMID:
15917329
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Holliday junction branch migration and resolution assays.

Constantinou A, West SC.

Methods Mol Biol. 2004;262:239-53.

PMID:
14769966
[PubMed - indexed for MEDLINE]
6.

Single molecule fluorescence analysis of branch migration of holliday junctions: effect of DNA sequence.

Karymov MA, Bogdanov A, Lyubchenko YL.

Biophys J. 2008 Aug;95(3):1239-47. doi: 10.1529/biophysj.107.127522. Epub 2008 Apr 18.

PMID:
18424495
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

DNA recombination: holliday junctions dynamics and branch migration.

Lushnikov AY, Bogdanov A, Lyubchenko YL.

J Biol Chem. 2003 Oct 31;278(44):43130-4. Epub 2003 Aug 29.

PMID:
12949070
[PubMed - indexed for MEDLINE]
Free Article
8.

Holliday junction crossover topology.

Fu TJ, Tse-Dinh YC, Seeman NC.

J Mol Biol. 1994 Feb 11;236(1):91-105.

PMID:
8107128
[PubMed - indexed for MEDLINE]
9.

RuvA is a sliding collar that protects Holliday junctions from unwinding while promoting branch migration.

Kaplan DL, O'Donnell M.

J Mol Biol. 2006 Jan 20;355(3):473-90. Epub 2005 Nov 16.

PMID:
16324713
[PubMed - indexed for MEDLINE]
10.

Direct evidence for spontaneous branch migration in antiparallel DNA Holliday junctions.

Sha R, Liu F, Seeman NC.

Biochemistry. 2000 Sep 19;39(37):11514-22.

PMID:
10985798
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Formation of a single base mismatch impedes spontaneous DNA branch migration.

Panyutin IG, Hsieh P.

J Mol Biol. 1993 Mar 20;230(2):413-24.

PMID:
8464057
[PubMed - indexed for MEDLINE]
12.

A rare nucleotide base tautomer in the structure of an asymmetric DNA junction.

Khuu P, Ho PS.

Biochemistry. 2009 Aug 25;48(33):7824-32. doi: 10.1021/bi900829b.

PMID:
19580331
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Crystal structure of T4 endonuclease VII resolving a Holliday junction.

Biertümpfel C, Yang W, Suck D.

Nature. 2007 Oct 4;449(7162):616-20. Epub 2007 Sep 16.

PMID:
17873859
[PubMed - indexed for MEDLINE]
14.

The Holliday junction in an inverted repeat DNA sequence: sequence effects on the structure of four-way junctions.

Eichman BF, Vargason JM, Mooers BH, Ho PS.

Proc Natl Acad Sci U S A. 2000 Apr 11;97(8):3971-6.

PMID:
10760268
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Observing spontaneous branch migration of Holliday junctions one step at a time.

McKinney SA, Freeman AD, Lilley DM, Ha T.

Proc Natl Acad Sci U S A. 2005 Apr 19;102(16):5715-20. Epub 2005 Apr 11.

PMID:
15824311
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Structure, dynamics, and branch migration of a DNA Holliday junction: a single-molecule fluorescence and modeling study.

Karymov MA, Chinnaraj M, Bogdanov A, Srinivasan AR, Zheng G, Olson WK, Lyubchenko YL.

Biophys J. 2008 Nov 1;95(9):4372-83. doi: 10.1529/biophysj.108.135103. Epub 2008 Jul 25.

PMID:
18658216
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A novel, topologically constrained DNA molecule containing a double Holliday junction: design, synthesis, and initial biochemical characterization.

Plank JL, Hsieh TS.

J Biol Chem. 2006 Jun 23;281(25):17510-6. Epub 2006 Apr 11.

PMID:
16608853
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Single-molecule studies of DNA and RNA four-way junctions.

McKinney SA, Tan E, Wilson TJ, Nahas MK, Déclais AC, Clegg RM, Lilley DM, Ha T.

Biochem Soc Trans. 2004 Feb;32(Pt 1):41-5.

PMID:
14748709
[PubMed - indexed for MEDLINE]
19.

A histone octamer blocks branch migration of a Holliday junction.

Grigoriev M, Hsieh P.

Mol Cell Biol. 1997 Dec;17(12):7139-50.

PMID:
9372946
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The structural basis of Holliday junction resolution by T7 endonuclease I.

Hadden JM, Déclais AC, Carr SB, Lilley DM, Phillips SE.

Nature. 2007 Oct 4;449(7162):621-4. Epub 2007 Sep 16.

PMID:
17873858
[PubMed - indexed for MEDLINE]

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