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Deep sequencing from hen1 mutants to identify small RNA 3' modifications.

Zhai J, Meyers BC.

Cold Spring Harb Symp Quant Biol. 2012;77:213-9. doi: 10.1101/sqb.2013.77.014779. Epub 2013 Feb 7. Review.


CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana.

Park W, Li J, Song R, Messing J, Chen X.

Curr Biol. 2002 Sep 3;12(17):1484-95.


Plant microRNAs display differential 3' truncation and tailing modifications that are ARGONAUTE1 dependent and conserved across species.

Zhai J, Zhao Y, Simon SA, Huang S, Petsch K, Arikit S, Pillay M, Ji L, Xie M, Cao X, Yu B, Timmermans M, Yang B, Chen X, Meyers BC.

Plant Cell. 2013 Jul;25(7):2417-28. doi: 10.1105/tpc.113.114603. Epub 2013 Jul 9.


The Arabidopsis nucleotidyl transferase HESO1 uridylates unmethylated small RNAs to trigger their degradation.

Zhao Y, Yu Y, Zhai J, Ramachandran V, Dinh TT, Meyers BC, Mo B, Chen X.

Curr Biol. 2012 Apr 24;22(8):689-94. doi: 10.1016/j.cub.2012.02.051. Epub 2012 Mar 29.


siRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis.

Yu B, Bi L, Zhai J, Agarwal M, Li S, Wu Q, Ding SW, Meyers BC, Vaucheret H, Chen X.

Nucleic Acids Res. 2010 Sep;38(17):5844-50. doi: 10.1093/nar/gkq348. Epub 2010 May 6.


Mechanisms that impact microRNA stability in plants.

Zhao Y, Mo B, Chen X.

RNA Biol. 2012 Oct;9(10):1218-23. doi: 10.4161/rna.22034. Epub 2012 Sep 20.


A loop-to-base processing mechanism underlies the biogenesis of plant microRNAs miR319 and miR159.

Bologna NG, Mateos JL, Bresso EG, Palatnik JF.

EMBO J. 2009 Dec 2;28(23):3646-56. doi: 10.1038/emboj.2009.292. Epub 2009 Oct 8.


The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development.

Vaucheret H, Vazquez F, Crété P, Bartel DP.

Genes Dev. 2004 May 15;18(10):1187-97. Epub 2004 May 6.


Two cap-binding proteins CBP20 and CBP80 are involved in processing primary MicroRNAs.

Kim S, Yang JY, Xu J, Jang IC, Prigge MJ, Chua NH.

Plant Cell Physiol. 2008 Nov;49(11):1634-44. doi: 10.1093/pcp/pcn146. Epub 2008 Sep 30.


Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing.

Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS.

BMC Plant Biol. 2011 Jan 10;11:5. doi: 10.1186/1471-2229-11-5.


Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis.

Li J, Yang Z, Yu B, Liu J, Chen X.

Curr Biol. 2005 Aug 23;15(16):1501-7.


Short non-coding RNA fragments accumulating in chloroplasts: footprints of RNA binding proteins?

Ruwe H, Schmitz-Linneweber C.

Nucleic Acids Res. 2012 Apr;40(7):3106-16. doi: 10.1093/nar/gkr1138. Epub 2011 Dec 1.


The role of decapping proteins in the miRNA accumulation in Arabidopsis thaliana.

Motomura K, Le QT, Kumakura N, Fukaya T, Takeda A, Watanabe Y.

RNA Biol. 2012 May;9(5):644-52. doi: 10.4161/rna.19877. Epub 2012 May 1.


Alternative mRNA processing increases the complexity of microRNA-based gene regulation in Arabidopsis.

Yang X, Zhang H, Li L.

Plant J. 2012 May;70(3):421-31. doi: 10.1111/j.1365-313X.2011.04882.x. Epub 2012 Jan 16.


Post-transcriptional control of miRNA abundance in Arabidopsis.

Ren G, Yu B.

Plant Signal Behav. 2012 Nov;7(11):1443-6. doi: 10.4161/psb.21956. Epub 2012 Sep 7. Review.


Arabidopsis HEN1: a genetic link between endogenous miRNA controlling development and siRNA controlling transgene silencing and virus resistance.

Boutet S, Vazquez F, Liu J, Béclin C, Fagard M, Gratias A, Morel JB, Crété P, Chen X, Vaucheret H.

Curr Biol. 2003 May 13;13(10):843-8.


Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology.

Zhang B, Xie D, Jin Z.

J Integr Plant Biol. 2012 Feb;54(2):73-86. doi: 10.1111/j.1744-7909.2012.01098.x. Erratum in: J Integr Plant Biol. 2012 Mar;54(3):207.


Identification and characterization of small non-coding RNAs from Chinese fir by high throughput sequencing.

Wan LC, Wang F, Guo X, Lu S, Qiu Z, Zhao Y, Zhang H, Lin J.

BMC Plant Biol. 2012 Aug 15;12:146. doi: 10.1186/1471-2229-12-146.


MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant.

Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC.

Genome Res. 2006 Oct;16(10):1276-88. Epub 2006 Sep 5.

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