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Items: 1 to 20 of 98

1.

QM/MM simulations of vibrational spectra of bacteriorhodopsin and channelrhodopsin-2.

Welke K, Watanabe HC, Wolter T, Gaus M, Elstner M.

Phys Chem Chem Phys. 2013 May 14;15(18):6651-9. doi: 10.1039/c3cp44181d. Epub 2013 Feb 6.

PMID:
23385325
2.

The DC gate in Channelrhodopsin-2: crucial hydrogen bonding interaction between C128 and D156.

Nack M, Radu I, Gossing M, Bamann C, Bamberg E, von Mollard GF, Heberle J.

Photochem Photobiol Sci. 2010 Feb;9(2):194-8. doi: 10.1039/b9pp00157c. Epub 2010 Jan 7.

PMID:
20126794
3.

Water-containing hydrogen-bonding network in the active center of channelrhodopsin.

Ito S, Kato HE, Taniguchi R, Iwata T, Nureki O, Kandori H.

J Am Chem Soc. 2014 Mar 5;136(9):3475-82. doi: 10.1021/ja410836g. Epub 2014 Feb 21.

PMID:
24512107
4.

Conformational changes of channelrhodopsin-2.

Radu I, Bamann C, Nack M, Nagel G, Bamberg E, Heberle J.

J Am Chem Soc. 2009 Jun 3;131(21):7313-9. doi: 10.1021/ja8084274.

PMID:
19422231
5.

Monitoring light-induced structural changes of Channelrhodopsin-2 by UV-visible and Fourier transform infrared spectroscopy.

Ritter E, Stehfest K, Berndt A, Hegemann P, Bartl FJ.

J Biol Chem. 2008 Dec 12;283(50):35033-41. doi: 10.1074/jbc.M806353200. Epub 2008 Oct 16.

6.

Halide binding by the D212N mutant of Bacteriorhodopsin affects hydrogen bonding of water in the active site.

Shibata M, Yoshitsugu M, Mizuide N, Ihara K, Kandori H.

Biochemistry. 2007 Jun 26;46(25):7525-35. Epub 2007 Jun 5.

PMID:
17547422
7.

FTIR spectroscopy of the K photointermediate of Neurospora rhodopsin: structural changes of the retinal, protein, and water molecules after photoisomerization.

Furutani Y, Bezerra AG Jr, Waschuk S, Sumii M, Brown LS, Kandori H.

Biochemistry. 2004 Aug 3;43(30):9636-46.

PMID:
15274618
8.

The infrared spectra of the retinal chromophore in bacteriorhodopsin calculated by a DFT/MM approach.

Babitzki G, Mathias G, Tavan P.

J Phys Chem B. 2009 Jul 30;113(30):10496-508. doi: 10.1021/jp902432e.

PMID:
19580300
9.

Structures of aspartic acid-96 in the L and N intermediates of bacteriorhodopsin: analysis by Fourier transform infrared spectroscopy.

Maeda A, Sasaki J, Shichida Y, Yoshizawa T, Chang M, Ni B, Needleman R, Lanyi JK.

Biochemistry. 1992 May 19;31(19):4684-90.

PMID:
1316157
10.
11.
12.

Water structural changes in the bacteriorhodopsin photocycle: analysis by Fourier transform infrared spectroscopy.

Maeda A, Sasaki J, Shichida Y, Yoshizawa T.

Biochemistry. 1992 Jan 21;31(2):462-7.

PMID:
1731905
13.

FTIR studies of internal water molecules in the Schiff base region of bacteriorhodopsin.

Shibata M, Kandori H.

Biochemistry. 2005 May 24;44(20):7406-13.

PMID:
15895984
14.
15.

Hydration switch model for the proton transfer in the Schiff base region of bacteriorhodopsin.

Kandori H.

Biochim Biophys Acta. 2004 Jul 23;1658(1-2):72-9. Review.

16.

Role of hydrogen-bond network in energy storage of bacteriorhodopsin's light-driven proton pump revealed by ab initio normal-mode analysis.

Hayashi S, Tajkhorshid E, Kandori H, Schulten K.

J Am Chem Soc. 2004 Sep 1;126(34):10516-7.

PMID:
15327290
17.

Hydrogen bonds of water and C==O groups coordinate long-range structural changes in the L photointermediate of bacteriorhodopsin.

Yamazaki Y, Tuzi S, Saitรด H, Kandori H, Needleman R, Lanyi JK, Maeda A.

Biochemistry. 1996 Apr 2;35(13):4063-8.

PMID:
8672440
18.

Femtosecond infrared spectroscopy of bacteriorhodopsin chromophore isomerization.

Herbst J, Heyne K, Diller R.

Science. 2002 Aug 2;297(5582):822-5.

19.

How does a membrane protein achieve a vectorial proton transfer via water molecules?

Wolf S, Freier E, Gerwert K.

Chemphyschem. 2008 Dec 22;9(18):2772-8. doi: 10.1002/cphc.200800703.

PMID:
19072873
20.

Structural change of threonine 89 upon photoisomerization in bacteriorhodopsin as revealed by polarized FTIR spectroscopy.

Kandori H, Kinoshita N, Yamazaki Y, Maeda A, Shichida Y, Needleman R, Lanyi JK, Bizounok M, Herzfeld J, Raap J, Lugtenburg J.

Biochemistry. 1999 Jul 27;38(30):9676-83.

PMID:
10423246
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