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Results: 1 to 20 of 111

1.

Comparisons of infant Escherichia coli isolates link genomic profiles with adaptation to the ecological niche.

de Muinck EJ, Lagesen K, Afset JE, Didelot X, Rønningen KS, Rudi K, Stenseth NC, Trosvik P.

BMC Genomics. 2013 Feb 5;14:81. doi: 10.1186/1471-2164-14-81.

PMID:
23384204
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A phylogenomic analysis of Escherichia coli / Shigella group: implications of genomic features associated with pathogenicity and ecological adaptation.

Zhang Y, Lin K.

BMC Evol Biol. 2012 Sep 7;12:174. doi: 10.1186/1471-2148-12-174.

PMID:
22958895
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

E. coli as an all-rounder: the thin line between commensalism and pathogenicity.

Leimbach A, Hacker J, Dobrindt U.

Curr Top Microbiol Immunol. 2013;358:3-32. doi: 10.1007/82_2012_303. Review.

PMID:
23340801
[PubMed - indexed for MEDLINE]
4.

Comparative genomics of Escherichia coli isolated from patients with inflammatory bowel disease.

Vejborg RM, Hancock V, Petersen AM, Krogfelt KA, Klemm P.

BMC Genomics. 2011 Jun 15;12:316. doi: 10.1186/1471-2164-12-316.

PMID:
21676223
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Analysis of genome plasticity in pathogenic and commensal Escherichia coli isolates by use of DNA arrays.

Dobrindt U, Agerer F, Michaelis K, Janka A, Buchrieser C, Samuelson M, Svanborg C, Gottschalk G, Karch H, Hacker J.

J Bacteriol. 2003 Mar;185(6):1831-40.

PMID:
12618447
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The GimA locus of extraintestinal pathogenic E. coli: does reductive evolution correlate with habitat and pathotype?

Homeier T, Semmler T, Wieler LH, Ewers C.

PLoS One. 2010 May 28;5(5):e10877. doi: 10.1371/journal.pone.0010877.

PMID:
20526361
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

CRISPR distribution within the Escherichia coli species is not suggestive of immunity-associated diversifying selection.

Touchon M, Charpentier S, Clermont O, Rocha EP, Denamur E, Branger C.

J Bacteriol. 2011 May;193(10):2460-7. doi: 10.1128/JB.01307-10. Epub 2011 Mar 18.

PMID:
21421763
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A virulent parent with probiotic progeny: comparative genomics of Escherichia coli strains CFT073, Nissle 1917 and ABU 83972.

Vejborg RM, Friis C, Hancock V, Schembri MA, Klemm P.

Mol Genet Genomics. 2010 May;283(5):469-84. doi: 10.1007/s00438-010-0532-9. Epub 2010 Mar 31.

PMID:
20354866
[PubMed - indexed for MEDLINE]
9.

The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates.

Rasko DA, Rosovitz MJ, Myers GS, Mongodin EF, Fricke WF, Gajer P, Crabtree J, Sebaihia M, Thomson NR, Chaudhuri R, Henderson IR, Sperandio V, Ravel J.

J Bacteriol. 2008 Oct;190(20):6881-93. doi: 10.1128/JB.00619-08. Epub 2008 Aug 1.

PMID:
18676672
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The evolution of metabolic networks of E. coli.

Baumler DJ, Peplinski RG, Reed JL, Glasner JD, Perna NT.

BMC Syst Biol. 2011 Nov 1;5:182. doi: 10.1186/1752-0509-5-182.

PMID:
22044664
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths.

Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, Bidet P, Bingen E, Bonacorsi S, Bouchier C, Bouvet O, Calteau A, Chiapello H, Clermont O, Cruveiller S, Danchin A, Diard M, Dossat C, Karoui ME, Frapy E, Garry L, Ghigo JM, Gilles AM, Johnson J, Le Bouguénec C, Lescat M, Mangenot S, Martinez-Jéhanne V, Matic I, Nassif X, Oztas S, Petit MA, Pichon C, Rouy Z, Ruf CS, Schneider D, Tourret J, Vacherie B, Vallenet D, Médigue C, Rocha EP, Denamur E.

PLoS Genet. 2009 Jan;5(1):e1000344. doi: 10.1371/journal.pgen.1000344. Epub 2009 Jan 23.

PMID:
19165319
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes.

Nash JH, Villegas A, Kropinski AM, Aguilar-Valenzuela R, Konczy P, Mascarenhas M, Ziebell K, Torres AG, Karmali MA, Coombes BK.

BMC Genomics. 2010 Nov 25;11:667. doi: 10.1186/1471-2164-11-667.

PMID:
21108814
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Listeria monocytogenes lineages: Genomics, evolution, ecology, and phenotypic characteristics.

Orsi RH, den Bakker HC, Wiedmann M.

Int J Med Microbiol. 2011 Feb;301(2):79-96. doi: 10.1016/j.ijmm.2010.05.002. Epub 2010 Aug 13. Review.

PMID:
20708964
[PubMed - indexed for MEDLINE]
14.

Large-scale comparative phenotypic and genomic analyses reveal ecological preferences of shewanella species and identify metabolic pathways conserved at the genus level.

Rodrigues JL, Serres MH, Tiedje JM.

Appl Environ Microbiol. 2011 Aug;77(15):5352-60. doi: 10.1128/AEM.00097-11. Epub 2011 Jun 3.

PMID:
21642407
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Nutritional basis for colonization resistance by human commensal Escherichia coli strains HS and Nissle 1917 against E. coli O157:H7 in the mouse intestine.

Maltby R, Leatham-Jensen MP, Gibson T, Cohen PS, Conway T.

PLoS One. 2013;8(1):e53957. doi: 10.1371/journal.pone.0053957. Epub 2013 Jan 17.

PMID:
23349773
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Suppression subtractive hybridization identifies an autotransporter adhesin gene of E. coli IMT5155 specifically associated with avian pathogenic Escherichia coli (APEC).

Dai J, Wang S, Guerlebeck D, Laturnus C, Guenther S, Shi Z, Lu C, Ewers C.

BMC Microbiol. 2010 Sep 9;10:236. doi: 10.1186/1471-2180-10-236.

PMID:
20828376
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Comparative genomic hybridization and physiological characterization of environmental isolates indicate that significant (eco-)physiological properties are highly conserved in the species Escherichia coli.

Ihssen J, Grasselli E, Bassin C, François P, Piffaretti JC, Köster W, Schrenzel J, Egli T.

Microbiology. 2007 Jul;153(Pt 7):2052-66.

PMID:
17600050
[PubMed - indexed for MEDLINE]
Free Article
18.

Invasive properties, adhesion patterns and phylogroup profiles among Escherichia coli strains isolated from children with inflammatory bowel disease.

Sobieszczańska BA, Duda-Madej AB, Turniak MB, Franiczek R, Kasprzykowska U, Duda AK, Rzeszutko M, Iwańczak B.

Adv Clin Exp Med. 2012 Sep-Oct;21(5):591-9.

PMID:
23356195
[PubMed - indexed for MEDLINE]
Free Article
19.

A comparative genomic analysis of diverse clonal types of enterotoxigenic Escherichia coli reveals pathovar-specific conservation.

Sahl JW, Steinsland H, Redman JC, Angiuoli SV, Nataro JP, Sommerfelt H, Rasko DA.

Infect Immun. 2011 Feb;79(2):950-60. doi: 10.1128/IAI.00932-10. Epub 2010 Nov 15.

PMID:
21078854
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Cryptic lineages of the genus Escherichia.

Walk ST, Alm EW, Gordon DM, Ram JL, Toranzos GA, Tiedje JM, Whittam TS.

Appl Environ Microbiol. 2009 Oct;75(20):6534-44. doi: 10.1128/AEM.01262-09. Epub 2009 Aug 21.

PMID:
19700542
[PubMed - indexed for MEDLINE]
Free PMC Article

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