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Results: 1 to 20 of 231

1.

Discovering functional microRNA-mRNA regulatory modules in heterogeneous data.

Liu B, Liu L, Tsykin A, Goodall GJ, Cairns MJ, Li J.

Adv Exp Med Biol. 2013;774:267-90. doi: 10.1007/978-94-007-5590-1_14.

PMID:
23377978
[PubMed - indexed for MEDLINE]
2.

Identifying functional miRNA-mRNA regulatory modules with correspondence latent dirichlet allocation.

Liu B, Liu L, Tsykin A, Goodall GJ, Green JE, Zhu M, Kim CH, Li J.

Bioinformatics. 2010 Dec 15;26(24):3105-11. doi: 10.1093/bioinformatics/btq576. Epub 2010 Oct 17.

PMID:
20956247
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Exploring complex miRNA-mRNA interactions with Bayesian networks by splitting-averaging strategy.

Liu B, Li J, Tsykin A, Liu L, Gaur AB, Goodall GJ.

BMC Bioinformatics. 2009 Dec 10;10:408. doi: 10.1186/1471-2105-10-408.

PMID:
20003267
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers.

Peng X, Li Y, Walters KA, Rosenzweig ER, Lederer SL, Aicher LD, Proll S, Katze MG.

BMC Genomics. 2009 Aug 11;10:373. doi: 10.1186/1471-2164-10-373.

PMID:
19671175
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

An in silico analysis of dynamic changes in microRNA expression profiles in stepwise development of nasopharyngeal carcinoma.

Luo Z, Zhang L, Li Z, Li X, Li G, Yu H, Jiang C, Dai Y, Guo X, Xiang J, Li G.

BMC Med Genomics. 2012 Jan 19;5:3. doi: 10.1186/1755-8794-5-3.

PMID:
22260379
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Identifying microRNA-mRNA regulatory network in colorectal cancer by a combination of expression profile and bioinformatics analysis.

Fu J, Tang W, Du P, Wang G, Chen W, Li J, Zhu Y, Gao J, Cui L.

BMC Syst Biol. 2012 Jun 15;6:68. doi: 10.1186/1752-0509-6-68.

PMID:
22703586
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Discovery of microRNA regulatory networks by integrating multidimensional high-throughput data.

Yang JH, Qu LH.

Adv Exp Med Biol. 2013;774:251-66. doi: 10.1007/978-94-007-5590-1_13.

PMID:
23377977
[PubMed - indexed for MEDLINE]
8.

Finding microRNA regulatory modules in human genome using rule induction.

Tran DH, Satou K, Ho TB.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S5. doi: 10.1186/1471-2105-9-S12-S5.

PMID:
19091028
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Modeling microRNA-mRNA interactions using PLS regression in human colon cancer.

Li X, Gill R, Cooper NG, Yoo JK, Datta S.

BMC Med Genomics. 2011 May 19;4:44. doi: 10.1186/1755-8794-4-44.

PMID:
21595958
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Identification of microRNA-mRNA modules using microarray data.

Jayaswal V, Lutherborrow M, Ma DD, Yang YH.

BMC Genomics. 2011 Mar 6;12:138. doi: 10.1186/1471-2164-12-138.

PMID:
21375780
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A least angle regression model for the prediction of canonical and non-canonical miRNA-mRNA interactions.

Engelmann JC, Spang R.

PLoS One. 2012;7(7):e40634. doi: 10.1371/journal.pone.0040634. Epub 2012 Jul 17.

PMID:
22815777
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

MicroRNA networks in mouse lung organogenesis.

Dong J, Jiang G, Asmann YW, Tomaszek S, Jen J, Kislinger T, Wigle DA.

PLoS One. 2010 May 26;5(5):e10854. doi: 10.1371/journal.pone.0010854.

PMID:
20520778
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Correlation of expression profiles between microRNAs and mRNA targets using NCI-60 data.

Wang YP, Li KB.

BMC Genomics. 2009 May 12;10:218. doi: 10.1186/1471-2164-10-218.

PMID:
19435500
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Inferring microRNA and transcription factor regulatory networks in heterogeneous data.

Le TD, Liu L, Liu B, Tsykin A, Goodall GJ, Satou K, Li J.

BMC Bioinformatics. 2013 Mar 11;14:92. doi: 10.1186/1471-2105-14-92.

PMID:
23497388
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Measures of association for identifying microRNA-mRNA pairs of biological interest.

Jayaswal V, Lutherborrow M, Yang YH.

PLoS One. 2012;7(1):e29612. doi: 10.1371/journal.pone.0029612. Epub 2012 Jan 11.

PMID:
22253745
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Inter- and intra-combinatorial regulation by transcription factors and microRNAs.

Zhou Y, Ferguson J, Chang JT, Kluger Y.

BMC Genomics. 2007 Oct 30;8:396.

PMID:
17971223
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Integrating sequence, expression and interaction data to determine condition-specific miRNA regulation.

Le HS, Bar-Joseph Z.

Bioinformatics. 2013 Jul 1;29(13):i89-97. doi: 10.1093/bioinformatics/btt231.

PMID:
23813013
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Identifying dysfunctional miRNA-mRNA regulatory modules by inverse activation, cofunction, and high interconnection of target genes: a case study of glioblastoma.

Xiao Y, Ping Y, Fan H, Xu C, Guan J, Zhao H, Li Y, Lv Y, Jin Y, Wang L, Li X.

Neuro Oncol. 2013 Jul;15(7):818-28. doi: 10.1093/neuonc/not018. Epub 2013 Mar 20.

PMID:
23516263
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Integrating microRNA target predictions for the discovery of gene regulatory networks: a semi-supervised ensemble learning approach.

Pio G, Malerba D, D'Elia D, Ceci M.

BMC Bioinformatics. 2014;15 Suppl 1:S4. doi: 10.1186/1471-2105-15-S1-S4. Epub 2014 Jan 10.

PMID:
24564296
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Integrating multiple types of data to identify microRNA-gene co-modules.

Zhang S.

Methods Mol Biol. 2013;1049:215-29. doi: 10.1007/978-1-62703-547-7_16.

PMID:
23913219
[PubMed - indexed for MEDLINE]

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