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Results: 1 to 20 of 150

1.

MicroRNA-regulated networks: the perfect storm for classical molecular biology, the ideal scenario for systems biology.

Vera J, Lai X, Schmitz U, Wolkenhauer O.

Adv Exp Med Biol. 2013;774:55-76. doi: 10.1007/978-94-007-5590-1_4. Review.

PMID:
23377968
[PubMed - indexed for MEDLINE]
2.

MicroRNA: a new entrance to the broad paradigm of systems molecular medicine.

Liang M.

Physiol Genomics. 2009 Jul 9;38(2):113-5. doi: 10.1152/physiolgenomics.00080.2009. Epub 2009 May 26. Review.

PMID:
19470802
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers.

Peng X, Li Y, Walters KA, Rosenzweig ER, Lederer SL, Aicher LD, Proll S, Katze MG.

BMC Genomics. 2009 Aug 11;10:373. doi: 10.1186/1471-2164-10-373.

PMID:
19671175
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

A systems' biology approach to study microRNA-mediated gene regulatory networks.

Lai X, Bhattacharya A, Schmitz U, Kunz M, Vera J, Wolkenhauer O.

Biomed Res Int. 2013;2013:703849. doi: 10.1155/2013/703849. Epub 2013 Nov 17.

PMID:
24350286
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Hybrid modeling of the crosstalk between signaling and transcriptional networks using ordinary differential equations and multi-valued logic.

Khan FM, Schmitz U, Nikolov S, Engelmann D, Pützer BM, Wolkenhauer O, Vera J.

Biochim Biophys Acta. 2014 Jan;1844(1 Pt B):289-98. doi: 10.1016/j.bbapap.2013.05.007. Epub 2013 May 18.

PMID:
23692959
[PubMed - indexed for MEDLINE]
6.

miRNAs: from biogenesis to networks.

Russo G, Giordano A.

Methods Mol Biol. 2009;563:303-52. doi: 10.1007/978-1-60761-175-2_17.

PMID:
19597793
[PubMed - indexed for MEDLINE]
7.

Discovery of microRNA regulatory networks by integrating multidimensional high-throughput data.

Yang JH, Qu LH.

Adv Exp Med Biol. 2013;774:251-66. doi: 10.1007/978-94-007-5590-1_13.

PMID:
23377977
[PubMed - indexed for MEDLINE]
8.

MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals.

Tsang J, Zhu J, van Oudenaarden A.

Mol Cell. 2007 Jun 8;26(5):753-67.

PMID:
17560377
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Discovering functional microRNA-mRNA regulatory modules in heterogeneous data.

Liu B, Liu L, Tsykin A, Goodall GJ, Cairns MJ, Li J.

Adv Exp Med Biol. 2013;774:267-90. doi: 10.1007/978-94-007-5590-1_14.

PMID:
23377978
[PubMed - indexed for MEDLINE]
10.

MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model.

Le Béchec A, Portales-Casamar E, Vetter G, Moes M, Zindy PJ, Saumet A, Arenillas D, Theillet C, Wasserman WW, Lecellier CH, Friederich E.

BMC Bioinformatics. 2011 Mar 4;12:67. doi: 10.1186/1471-2105-12-67.

PMID:
21375730
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Coordinated networks of microRNAs and transcription factors with evolutionary perspectives.

Iwama H.

Adv Exp Med Biol. 2013;774:169-87. doi: 10.1007/978-94-007-5590-1_10. Review.

PMID:
23377974
[PubMed - indexed for MEDLINE]
12.

The role of incoherent microRNA-mediated feedforward loops in noise buffering.

Osella M, Bosia C, Corá D, Caselle M.

PLoS Comput Biol. 2011 Mar;7(3):e1001101. doi: 10.1371/journal.pcbi.1001101. Epub 2011 Mar 10.

PMID:
21423718
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A model-based strategy to investigate the role of microRNA regulation in cancer signalling networks.

Nikolov S, Vera J, Schmitz U, Wolkenhauer O.

Theory Biosci. 2011 Mar;130(1):55-69. doi: 10.1007/s12064-010-0109-5. Epub 2010 Aug 31.

PMID:
20809366
[PubMed - indexed for MEDLINE]
14.

Modeling microRNA-transcription factor networks in cancer.

Aguda BD.

Adv Exp Med Biol. 2013;774:149-67. doi: 10.1007/978-94-007-5590-1_9. Review.

PMID:
23377973
[PubMed - indexed for MEDLINE]
15.

The p53/microRNA network in cancer: experimental and bioinformatics approaches.

Hünten S, Siemens H, Kaller M, Hermeking H.

Adv Exp Med Biol. 2013;774:77-101. doi: 10.1007/978-94-007-5590-1_5. Review.

PMID:
23377969
[PubMed - indexed for MEDLINE]
16.

Dynamics of microRNA-mediated motifs.

Xu F, Liu Z, Shen J, Wang R.

IET Syst Biol. 2009 Nov;3(6):496-504. doi: 10.1049/iet-syb.2009.0001.

PMID:
19947775
[PubMed - indexed for MEDLINE]
17.

Analyzing miRNA co-expression networks to explore TF-miRNA regulation.

Bandyopadhyay S, Bhattacharyya M.

BMC Bioinformatics. 2009 May 28;10:163. doi: 10.1186/1471-2105-10-163.

PMID:
19476620
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

MicroRNA-mediated regulation in the mammalian circadian rhythm.

Liu K, Wang R.

J Theor Biol. 2012 Jul 7;304:103-10. doi: 10.1016/j.jtbi.2012.03.037. Epub 2012 Apr 8.

PMID:
22554948
[PubMed - indexed for MEDLINE]
19.

Identification of microRNA regulatory modules in Arabidopsis via a probabilistic graphical model.

Joung JG, Fei Z.

Bioinformatics. 2009 Feb 1;25(3):387-93. doi: 10.1093/bioinformatics/btn626. Epub 2008 Dec 4.

PMID:
19056778
[PubMed - indexed for MEDLINE]
Free Article
20.

MicroRNA networks and developmental plasticity in plants.

Rubio-Somoza I, Weigel D.

Trends Plant Sci. 2011 May;16(5):258-64. doi: 10.1016/j.tplants.2011.03.001. Epub 2011 Apr 4. Review.

PMID:
21466971
[PubMed - indexed for MEDLINE]

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