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Results: 1 to 20 of 114

1.

Overview of molecular typing methods for outbreak detection and epidemiological surveillance.

Sabat AJ, Budimir A, Nashev D, Sá-Leão R, van Dijl Jm, Laurent F, Grundmann H, Friedrich AW; ESCMID Study Group of Epidemiological Markers (ESGEM).

Euro Surveill. 2013 Jan 24;18(4):20380. Review.

PMID:
23369389
[PubMed - indexed for MEDLINE]
Free Article
2.

Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study.

Roetzer A, Diel R, Kohl TA, Rückert C, Nübel U, Blom J, Wirth T, Jaenicke S, Schuback S, Rüsch-Gerdes S, Supply P, Kalinowski J, Niemann S.

PLoS Med. 2013;10(2):e1001387. doi: 10.1371/journal.pmed.1001387. Epub 2013 Feb 12.

PMID:
23424287
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Comparative and library epidemiological typing systems: outbreak investigations versus surveillance systems.

Struelens MJ, De Gheldre Y, Deplano A.

Infect Control Hosp Epidemiol. 1998 Aug;19(8):565-9.

PMID:
9758056
[PubMed - indexed for MEDLINE]
4.

Ion torrent personal genome machine sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information.

Vogel U, Szczepanowski R, Claus H, Jünemann S, Prior K, Harmsen D.

J Clin Microbiol. 2012 Jun;50(6):1889-94. doi: 10.1128/JCM.00038-12. Epub 2012 Mar 29.

PMID:
22461678
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Outbreak analysis and typing of MRSA isolates by automated repetitive-sequence-based PCR in a region with multiple strain types causing epidemics.

Hirvonen JJ, Pasanen T, Tissari P, Salmenlinna S, Vuopio J, Kaukoranta SS.

Eur J Clin Microbiol Infect Dis. 2012 Nov;31(11):2935-42. doi: 10.1007/s10096-012-1644-4. Epub 2012 May 27.

PMID:
22644057
[PubMed - indexed for MEDLINE]
6.

Automated extraction of typing information for bacterial pathogens from whole genome sequence data: Neisseria meningitidis as an exemplar.

Jolley KA, Maiden MC.

Euro Surveill. 2013 Jan 24;18(4):20379. Review.

PMID:
23369391
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica.

Leekitcharoenphon P, Nielsen EM, Kaas RS, Lund O, Aarestrup FM.

PLoS One. 2014 Feb 4;9(2):e87991. doi: 10.1371/journal.pone.0087991. eCollection 2014.

PMID:
24505344
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

[Future prospects of molecular epidemiology in tuberculosis].

Matsumoto T, Iwamoto T.

Kekkaku. 2009 Dec;84(12):783-4. Japanese.

PMID:
20077862
[PubMed - indexed for MEDLINE]
9.

Current application and future perspectives of molecular typing methods to study Clostridium difficile infections.

Knetsch CW, Lawley TD, Hensgens MP, Corver J, Wilcox MW, Kuijper EJ.

Euro Surveill. 2013 Jan 24;18(4):20381. Review.

PMID:
23369393
[PubMed - indexed for MEDLINE]
Free Article
10.

Comparison of traditional and molecular methods of typing isolates of Staphylococcus aureus.

Tenover FC, Arbeit R, Archer G, Biddle J, Byrne S, Goering R, Hancock G, Hébert GA, Hill B, Hollis R, et al.

J Clin Microbiol. 1994 Feb;32(2):407-15.

PMID:
7908673
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Comparison of the Legionella pneumophila population structure as determined by sequence-based typing and whole genome sequencing.

Underwood AP, Jones G, Mentasti M, Fry NK, Harrison TG.

BMC Microbiol. 2013 Dec 24;13:302. doi: 10.1186/1471-2180-13-302.

PMID:
24364868
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Retrospective analysis of whole genome sequencing compared to prospective typing data in further informing the epidemiological investigation of an outbreak of Shigella sonnei in the UK.

McDonnell J, Dallman T, Atkin S, Turbitt DA, Connor TR, Grant KA, Thomson NR, Jenkins C.

Epidemiol Infect. 2013 Dec;141(12):2568-75. doi: 10.1017/S0950268813000137. Epub 2013 Feb 21.

PMID:
23425681
[PubMed - indexed for MEDLINE]
13.

Fighting outbreaks with bacterial genomics: case review and workflow proposal.

Cheung MK, Kwan HS.

Public Health Genomics. 2012;15(6):341-51. doi: 10.1159/000342770. Epub 2012 Oct 3. Review.

PMID:
23037860
[PubMed - indexed for MEDLINE]
15.

[Molecular epidemiology of infectious diseases: analytical methods and results interpretation].

Sammarco ML, Ripabelli G, Tamburro M.

Ann Ig. 2014 Jan-Feb;26(1):10-45. doi: 10.7416/ai.2014.1956. Italian.

PMID:
24452182
[PubMed - indexed for MEDLINE]
Free Article
16.

Staphylococcal cassette chromosome mec (Sccmec) classification and typing methods: an overview.

Turlej A, Hryniewicz W, Empel J.

Pol J Microbiol. 2011;60(2):95-103. Review.

PMID:
21905625
[PubMed - indexed for MEDLINE]
Free Article
17.

Comparison of PFGE, ribotyping and phage-typing in the epidemiological analysis of Campylobacter jejuni serotype HS2 infections.

Gibson JR, Fitzgerald C, Owen RJ.

Epidemiol Infect. 1995 Oct;115(2):215-25.

PMID:
7589261
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Comparison of automated repetitive-sequence-based polymerase chain reaction and spa typing versus pulsed-field gel electrophoresis for molecular typing of methicillin-resistant Staphylococcus aureus.

Church DL, Chow BL, Lloyd T, Gregson DB.

Diagn Microbiol Infect Dis. 2011 Jan;69(1):30-7. doi: 10.1016/j.diagmicrobio.2010.09.010.

PMID:
21146711
[PubMed - indexed for MEDLINE]
19.

Pan-PCR, a computational method for designing bacterium-typing assays based on whole-genome sequence data.

Yang JY, Brooks S, Meyer JA, Blakesley RR, Zelazny AM, Segre JA, Snitkin ES.

J Clin Microbiol. 2013 Mar;51(3):752-8. doi: 10.1128/JCM.02671-12. Epub 2012 Dec 19.

PMID:
23254127
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Tandem repeat analysis for surveillance of human Salmonella Typhimurium infections.

Torpdahl M, Sørensen G, Lindstedt BA, Nielsen EM.

Emerg Infect Dis. 2007 Mar;13(3):388-95.

PMID:
17552091
[PubMed - indexed for MEDLINE]
Free PMC Article
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