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Items: 1 to 20 of 132

1.

Multi-scale modeling of gene regulatory networks via integration of temporal and topological biological data.

Dimitrakopoulos G, Sgarbas K, Dimitrakopoulou K, Dragomir A, Bezerianos A, Maraziotis IA.

Conf Proc IEEE Eng Med Biol Soc. 2012;2012:1242-5. doi: 10.1109/EMBC.2012.6346162.

PMID:
23366123
2.

A new multiple regression approach for the construction of genetic regulatory networks.

Zhang SQ, Ching WK, Tsing NK, Leung HY, Guo D.

Artif Intell Med. 2010 Feb-Mar;48(2-3):153-60. doi: 10.1016/j.artmed.2009.11.001. Epub 2009 Dec 5.

PMID:
19963359
3.

Gene expression complex networks: synthesis, identification, and analysis.

Lopes FM, Cesar RM, Costa Lda F.

J Comput Biol. 2011 Oct;18(10):1353-67. doi: 10.1089/cmb.2010.0118. Epub 2011 May 6.

PMID:
21548810
4.

Inference of gene regulatory networks incorporating multi-source biological knowledge via a state space model with L1 regularization.

Hasegawa T, Yamaguchi R, Nagasaki M, Miyano S, Imoto S.

PLoS One. 2014 Aug 27;9(8):e105942. doi: 10.1371/journal.pone.0105942. eCollection 2014.

5.

IRIS: a method for reverse engineering of regulatory relations in gene networks.

Morganella S, Zoppoli P, Ceccarelli M.

BMC Bioinformatics. 2009 Dec 23;10:444. doi: 10.1186/1471-2105-10-444.

6.

A review of integration strategies to support gene regulatory network construction.

Chen H, VanBuren V.

ScientificWorldJournal. 2012;2012:435257. doi: 10.1100/2012/435257. Epub 2012 Dec 27. Review.

7.

Probabilistic functional gene societies.

Lee I.

Prog Biophys Mol Biol. 2011 Aug;106(2):435-42. doi: 10.1016/j.pbiomolbio.2011.01.003. Epub 2011 Jan 31. Review.

PMID:
21281658
8.

Biological Network Inference and analysis using SEBINI and CABIN.

Taylor R, Singhal M.

Methods Mol Biol. 2009;541:551-76. doi: 10.1007/978-1-59745-243-4_24. Review.

PMID:
19381531
9.

Gene regulatory network inference: data integration in dynamic models-a review.

Hecker M, Lambeck S, Toepfer S, van Someren E, Guthke R.

Biosystems. 2009 Apr;96(1):86-103. doi: 10.1016/j.biosystems.2008.12.004. Epub 2008 Dec 27. Review.

PMID:
19150482
10.

Gene regulatory networks modelling using a dynamic evolutionary hybrid.

Maraziotis IA, Dragomir A, Thanos D.

BMC Bioinformatics. 2010 Mar 18;11:140. doi: 10.1186/1471-2105-11-140.

12.

Knowledge-guided multi-scale independent component analysis for biomarker identification.

Chen L, Xuan J, Wang C, Shih IeM, Wang Y, Zhang Z, Hoffman E, Clarke R.

BMC Bioinformatics. 2008 Oct 6;9:416. doi: 10.1186/1471-2105-9-416.

13.

TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach.

Zoppoli P, Morganella S, Ceccarelli M.

BMC Bioinformatics. 2010 Mar 25;11:154. doi: 10.1186/1471-2105-11-154.

14.

Modeling of gene regulatory network dynamics using threshold logic.

Gowda T, Vrudhula S, Kim S.

Ann N Y Acad Sci. 2009 Mar;1158:71-81. doi: 10.1111/j.1749-6632.2008.03754.x.

PMID:
19348633
15.

Efficient key pathway mining: combining networks and OMICS data.

Alcaraz N, Friedrich T, Kötzing T, Krohmer A, Müller J, Pauling J, Baumbach J.

Integr Biol (Camb). 2012 Jul;4(7):756-64. doi: 10.1039/c2ib00133k. Epub 2012 Feb 21.

PMID:
22353882
16.

Continuous cotemporal probabilistic modeling of systems biology networks from sparse data.

John DJ, Fetrow JS, Norris JL.

IEEE/ACM Trans Comput Biol Bioinform. 2011 Sep-Oct;8(5):1208-22. doi: 10.1109/TCBB.2010.95.

17.

Computational and experimental approaches for modeling gene regulatory networks.

Goutsias J, Lee NH.

Curr Pharm Des. 2007;13(14):1415-36. Review.

PMID:
17504165
18.

Inference of biological pathway from gene expression profiles by time delay boolean networks.

Chueh TH, Lu HH.

PLoS One. 2012;7(8):e42095. doi: 10.1371/journal.pone.0042095. Epub 2012 Aug 31.

19.

On the transient and steady-state estimates of interval genetic regulatory networks.

Li P, Lam J, Shu Z.

IEEE Trans Syst Man Cybern B Cybern. 2010 Apr;40(2):336-49. doi: 10.1109/TSMCB.2009.2022402. Epub 2009 Oct 23.

PMID:
19858029
20.

Stability of building gene regulatory networks with sparse autoregressive models.

Rajapakse JC, Mundra PA.

BMC Bioinformatics. 2011;12 Suppl 13:S17. doi: 10.1186/1471-2105-12-S13-S17. Epub 2011 Nov 30.

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