Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 93

1.

Inferring the kinetics of stochastic gene expression from single-cell RNA-sequencing data.

Kim JK, Marioni JC.

Genome Biol. 2013 Jan 28;14(1):R7. doi: 10.1186/gb-2013-14-1-r7.

PMID:
23360624
[PubMed - in process]
Free PMC Article
2.

A flexible count data model to fit the wide diversity of expression profiles arising from extensively replicated RNA-seq experiments.

Esnaola M, Puig P, Gonzalez D, Castelo R, Gonzalez JR.

BMC Bioinformatics. 2013 Aug 21;14:254. doi: 10.1186/1471-2105-14-254.

PMID:
23965047
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Computer and statistical analysis of transcription factor binding and chromatin modifications by ChIP-seq data in embryonic stem cell.

Orlov Y, Xu H, Afonnikov D, Lim B, Heng JC, Yuan P, Chen M, Yan J, Clarke N, Orlova N, Huss M, Gunbin K, Podkolodnyy N, Ng HH.

J Integr Bioinform. 2012 Sep 18;9(2):211. doi: 10.2390/biecoll-jib-2012-211.

PMID:
22987856
[PubMed - indexed for MEDLINE]
4.

Efficient library preparation for next-generation sequencing analysis of genome-wide epigenetic and transcriptional landscapes in embryonic stem cells.

Kidder BL, Zhao K.

Methods Mol Biol. 2014;1150:3-20. doi: 10.1007/978-1-4939-0512-6_1.

PMID:
24743988
[PubMed - in process]
5.

A model based criterion for gene expression calls using RNA-seq data.

Wagner GP, Kin K, Lynch VJ.

Theory Biosci. 2013 Sep;132(3):159-64. doi: 10.1007/s12064-013-0178-3. Epub 2013 Apr 25.

PMID:
23615947
[PubMed - indexed for MEDLINE]
6.

Pluripotency factors and Polycomb Group proteins repress aryl hydrocarbon receptor expression in murine embryonic stem cells.

Ko CI, Wang Q, Fan Y, Xia Y, Puga A.

Stem Cell Res. 2014 Jan;12(1):296-308. doi: 10.1016/j.scr.2013.11.007. Epub 2013 Nov 16.

PMID:
24316986
[PubMed - indexed for MEDLINE]
Free Article
7.

Transcriptional regulation of lineage commitment--a stochastic model of cell fate decisions.

Teles J, Pina C, Edén P, Ohlsson M, Enver T, Peterson C.

PLoS Comput Biol. 2013;9(8):e1003197. doi: 10.1371/journal.pcbi.1003197. Epub 2013 Aug 22.

PMID:
23990771
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Stochastic NANOG fluctuations allow mouse embryonic stem cells to explore pluripotency.

Abranches E, Guedes AM, Moravec M, Maamar H, Svoboda P, Raj A, Henrique D.

Development. 2014 Jul;141(14):2770-9. doi: 10.1242/dev.108910.

PMID:
25005472
[PubMed - indexed for MEDLINE]
9.

The bench scientist's guide to statistical analysis of RNA-Seq data.

Yendrek CR, Ainsworth EA, Thimmapuram J.

BMC Res Notes. 2012 Sep 14;5:506. doi: 10.1186/1756-0500-5-506.

PMID:
22980220
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Monovalent and unpoised status of most genes in undifferentiated cell-enriched Drosophila testis.

Gan Q, Schones DE, Ho Eun S, Wei G, Cui K, Zhao K, Chen X.

Genome Biol. 2010;11(4):R42. doi: 10.1186/gb-2010-11-4-r42. Epub 2010 Apr 15.

PMID:
20398323
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

HERV-H RNA is abundant in human embryonic stem cells and a precise marker for pluripotency.

Santoni FA, Guerra J, Luban J.

Retrovirology. 2012 Dec 20;9:111. doi: 10.1186/1742-4690-9-111.

PMID:
23253934
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genome-wide epigenetic analysis of human pluripotent stem cells by ChIP and ChIP-Seq.

Hitchler MJ, Rice JC.

Methods Mol Biol. 2011;767:253-67. doi: 10.1007/978-1-61779-201-4_19.

PMID:
21822881
[PubMed - indexed for MEDLINE]
13.

Signed weighted gene co-expression network analysis of transcriptional regulation in murine embryonic stem cells.

Mason MJ, Fan G, Plath K, Zhou Q, Horvath S.

BMC Genomics. 2009 Jul 20;10:327. doi: 10.1186/1471-2164-10-327.

PMID:
19619308
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Enhancer identification in mouse embryonic stem cells using integrative modeling of chromatin and genomic features.

Chen CY, Morris Q, Mitchell JA.

BMC Genomics. 2012 Apr 26;13:152. doi: 10.1186/1471-2164-13-152.

PMID:
22537144
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

ChIP-Seq of transcription factors predicts absolute and differential gene expression in embryonic stem cells.

Ouyang Z, Zhou Q, Wong WH.

Proc Natl Acad Sci U S A. 2009 Dec 22;106(51):21521-6. doi: 10.1073/pnas.0904863106. Epub 2009 Dec 7.

PMID:
19995984
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Statistics of protein-DNA binding and the total number of binding sites for a transcription factor in the mammalian genome.

Kuznetsov VA, Singh O, Jenjaroenpun P.

BMC Genomics. 2010 Feb 10;11 Suppl 1:S12. doi: 10.1186/1471-2164-11-S1-S12.

PMID:
20158869
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq.

Shepard PJ, Choi EA, Lu J, Flanagan LA, Hertel KJ, Shi Y.

RNA. 2011 Apr;17(4):761-72. doi: 10.1261/rna.2581711. Epub 2011 Feb 22.

PMID:
21343387
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Disruption of aryl hydrocarbon receptor homeostatic levels during embryonic stem cell differentiation alters expression of homeobox transcription factors that control cardiomyogenesis.

Wang Q, Chen J, Ko CI, Fan Y, Carreira V, Chen Y, Xia Y, Medvedovic M, Puga A.

Environ Health Perspect. 2013 Nov-Dec;121(11-12):1334-43. doi: 10.1289/ehp.1307297. Epub 2013 Sep 19.

PMID:
24058054
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Nuclear Factor I genomic binding associates with chromatin boundaries.

Pjanic M, Schmid CD, Gaussin A, Ambrosini G, Adamcik J, Pjanic P, Plasari G, Kerschgens J, Dietler G, Bucher P, Mermod N.

BMC Genomics. 2013 Feb 12;14:99. doi: 10.1186/1471-2164-14-99.

PMID:
23402308
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).

Foffi G, Pastore A, Piazza F, Temussi PA.

Phys Biol. 2013 Aug 2;10(4):040301. [Epub ahead of print]

PMID:
23912807
[PubMed - as supplied by publisher]

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk