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Results: 1 to 20 of 102

1.

Large interrelated clusters of repetitive elements (REs) and RE arrays predominantly represent reference mouse chromosome Y.

Lee KH, Kim WC, Shin KS, Roh JK, Cho DH, Cho K.

Chromosome Res. 2013 Mar;21(1):15-26. doi: 10.1007/s10577-012-9334-8. Epub 2013 Jan 29.

PMID:
23359013
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Unique profile of ordered arrangements of repetitive elements in the C57BL/6J mouse genome implicating their functional roles.

Lee YK, Lee KH, Kim SG, Melhem R, Moon CS, Liu S, Greenhalgh DG, Cho K.

PLoS One. 2012;7(4):e35156. doi: 10.1371/journal.pone.0035156. Epub 2012 Apr 18.

PMID:
22529984
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

REMiner-II: a tool for rapid identification and configuration of repetitive element arrays from large mammalian chromosomes as a single query.

Kim WC, Lee KH, Shin KS, You RN, Lee YK, Cho K, Cho DH.

Genomics. 2012 Sep;100(3):131-40. doi: 10.1016/j.ygeno.2012.06.006. Epub 2012 Jun 28.

PMID:
22750555
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

REViewer: a tool for linear visualization of repetitive elements within a sequence query.

You RN, Kim WC, Lee KH, Lee YK, Shin KS, Cho K, Cho DH.

Genomics. 2013 Oct;102(4):209-14. doi: 10.1016/j.ygeno.2013.07.008. Epub 2013 Jul 24.

PMID:
23891933
[PubMed - indexed for MEDLINE]
5.

Identification of a unique library of complex, but ordered, arrays of repetitive elements in the human genome and implication of their potential involvement in pathobiology.

Lee KH, Lee YK, Kwon DN, Chiu S, Chew V, Rah H, Kujawski G, Melhem R, Hsu K, Chung C, Greenhalgh DG, Cho K.

Exp Mol Pathol. 2011 Jun;90(3):300-11. doi: 10.1016/j.yexmp.2011.02.007. Epub 2011 Mar 1.

PMID:
21376035
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

REMiner: a tool for unbiased mining and analysis of repetitive elements and their arrangement structures of large chromosomes.

Chung BI, Lee KH, Shin KS, Kim WC, Kwon DN, You RN, Lee YK, Cho K, Cho DH.

Genomics. 2011 Nov;98(5):381-9. doi: 10.1016/j.ygeno.2011.07.002. Epub 2011 Jul 22.

PMID:
21803149
[PubMed - indexed for MEDLINE]
Free PMC Article
7.
8.

Rapid evolution of mouse Y centromere repeat DNA belies recent sequence stability.

Pertile MD, Graham AN, Choo KH, Kalitsis P.

Genome Res. 2009 Dec;19(12):2202-13. doi: 10.1101/gr.092080.109. Epub 2009 Sep 8.

PMID:
19737860
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Multicopy genes uniquely amplified in the Y chromosome-specific repeats of the liverwort Marchantia polymorpha.

Ishizaki K, Shimizu-Ueda Y, Okada S, Yamamoto M, Fujisawa M, Yamato KT, Fukuzawa H, Ohyama K.

Nucleic Acids Res. 2002 Nov 1;30(21):4675-81.

PMID:
12409458
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Extensive direct-tandem organization of a long repeat DNA sequence on the Y chromosome of chinook salmon (Oncorhynchus tshawytscha).

Devlin RH, Stone GW, Smailus DE.

J Mol Evol. 1998 Mar;46(3):277-87.

PMID:
9493353
[PubMed - indexed for MEDLINE]
11.

Genomic organization of the sex-determining and adjacent regions of the sex chromosomes of medaka.

Kondo M, Hornung U, Nanda I, Imai S, Sasaki T, Shimizu A, Asakawa S, Hori H, Schmid M, Shimizu N, Schartl M.

Genome Res. 2006 Jul;16(7):815-26. Epub 2006 Jun 2.

PMID:
16751340
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The master sex-determination locus in threespine sticklebacks is on a nascent Y chromosome.

Peichel CL, Ross JA, Matson CK, Dickson M, Grimwood J, Schmutz J, Myers RM, Mori S, Schluter D, Kingsley DM.

Curr Biol. 2004 Aug 24;14(16):1416-24.

PMID:
15324658
[PubMed - indexed for MEDLINE]
Free Article
13.

The minimal mammalian Y chromosome - the marsupial Y as a model system.

Toder R, Wakefield MJ, Graves JA.

Cytogenet Cell Genet. 2000;91(1-4):285-92.

PMID:
11173870
[PubMed - indexed for MEDLINE]
14.

Molecular evolution of two paralogous tandemly repeated heterochromatic gene clusters linked to the X and Y chromosomes of Drosophila melanogaster.

Kogan GL, Epstein VN, Aravin AA, Gvozdev VA.

Mol Biol Evol. 2000 May;17(5):697-702.

PMID:
10779530
[PubMed - indexed for MEDLINE]
Free Article
15.

The sequence of the human genome.

Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, Zhang Q, Kodira CD, Zheng XH, Chen L, Skupski M, Subramanian G, Thomas PD, Zhang J, Gabor Miklos GL, Nelson C, Broder S, Clark AG, Nadeau J, McKusick VA, Zinder N, Levine AJ, Roberts RJ, Simon M, Slayman C, Hunkapiller M, Bolanos R, Delcher A, Dew I, Fasulo D, Flanigan M, Florea L, Halpern A, Hannenhalli S, Kravitz S, Levy S, Mobarry C, Reinert K, Remington K, Abu-Threideh J, Beasley E, Biddick K, Bonazzi V, Brandon R, Cargill M, Chandramouliswaran I, Charlab R, Chaturvedi K, Deng Z, Di Francesco V, Dunn P, Eilbeck K, Evangelista C, Gabrielian AE, Gan W, Ge W, Gong F, Gu Z, Guan P, Heiman TJ, Higgins ME, Ji RR, Ke Z, Ketchum KA, Lai Z, Lei Y, Li Z, Li J, Liang Y, Lin X, Lu F, Merkulov GV, Milshina N, Moore HM, Naik AK, Narayan VA, Neelam B, Nusskern D, Rusch DB, Salzberg S, Shao W, Shue B, Sun J, Wang Z, Wang A, Wang X, Wang J, Wei M, Wides R, Xiao C, Yan C, Yao A, Ye J, Zhan M, Zhang W, Zhang H, Zhao Q, Zheng L, Zhong F, Zhong W, Zhu S, Zhao S, Gilbert D, Baumhueter S, Spier G, Carter C, Cravchik A, Woodage T, Ali F, An H, Awe A, Baldwin D, Baden H, Barnstead M, Barrow I, Beeson K, Busam D, Carver A, Center A, Cheng ML, Curry L, Danaher S, Davenport L, Desilets R, Dietz S, Dodson K, Doup L, Ferriera S, Garg N, Gluecksmann A, Hart B, Haynes J, Haynes C, Heiner C, Hladun S, Hostin D, Houck J, Howland T, Ibegwam C, Johnson J, Kalush F, Kline L, Koduru S, Love A, Mann F, May D, McCawley S, McIntosh T, McMullen I, Moy M, Moy L, Murphy B, Nelson K, Pfannkoch C, Pratts E, Puri V, Qureshi H, Reardon M, Rodriguez R, Rogers YH, Romblad D, Ruhfel B, Scott R, Sitter C, Smallwood M, Stewart E, Strong R, Suh E, Thomas R, Tint NN, Tse S, Vech C, Wang G, Wetter J, Williams S, Williams M, Windsor S, Winn-Deen E, Wolfe K, Zaveri J, Zaveri K, Abril JF, Guigó R, Campbell MJ, Sjolander KV, Karlak B, Kejariwal A, Mi H, Lazareva B, Hatton T, Narechania A, Diemer K, Muruganujan A, Guo N, Sato S, Bafna V, Istrail S, Lippert R, Schwartz R, Walenz B, Yooseph S, Allen D, Basu A, Baxendale J, Blick L, Caminha M, Carnes-Stine J, Caulk P, Chiang YH, Coyne M, Dahlke C, Mays A, Dombroski M, Donnelly M, Ely D, Esparham S, Fosler C, Gire H, Glanowski S, Glasser K, Glodek A, Gorokhov M, Graham K, Gropman B, Harris M, Heil J, Henderson S, Hoover J, Jennings D, Jordan C, Jordan J, Kasha J, Kagan L, Kraft C, Levitsky A, Lewis M, Liu X, Lopez J, Ma D, Majoros W, McDaniel J, Murphy S, Newman M, Nguyen T, Nguyen N, Nodell M, Pan S, Peck J, Peterson M, Rowe W, Sanders R, Scott J, Simpson M, Smith T, Sprague A, Stockwell T, Turner R, Venter E, Wang M, Wen M, Wu D, Wu M, Xia A, Zandieh A, Zhu X.

Science. 2001 Feb 16;291(5507):1304-51. Erratum in: Science 2001 Jun 5;292(5523):1838.

PMID:
11181995
[PubMed - indexed for MEDLINE]
16.

Database of repetitive elements in complete genomes and data mining using transcription factor binding sites.

Horng JT, Lin FM, Lin JH, Huang HD, Liu BJ.

IEEE Trans Inf Technol Biomed. 2003 Jun;7(2):93-100.

PMID:
12834164
[PubMed - indexed for MEDLINE]
17.

41 kilobases of analyzed sequence from the pseudoautosomal and sex-determining regions of the short arm of the human Y chromosome.

Whitfield LS, Hawkins TL, Goodfellow PN, Sulston J.

Genomics. 1995 May 20;27(2):306-11.

PMID:
7557997
[PubMed - indexed for MEDLINE]
18.

GATA: a graphic alignment tool for comparative sequence analysis.

Nix DA, Eisen MB.

BMC Bioinformatics. 2005 Jan 17;6:9.

PMID:
15655071
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Refined repetitive sequence searches utilizing a fast hash function and cross species information retrievals.

Reneker J, Shyu CR.

BMC Bioinformatics. 2005 May 3;6:111.

PMID:
15869708
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Nucleotide sequence analysis of a mouse Y chromosomal DNA fragment containing Bkm and LINE elements.

Nishioka Y, Dolan BM, Fiorellino A, Prado VF.

Genetica. 1992;87(1):7-15.

PMID:
1459466
[PubMed - indexed for MEDLINE]

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