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Results: 1 to 20 of 111

Similar articles for PubMed (Select 23349772)

1.

In vivo facilitated diffusion model.

Bauer M, Metzler R.

PLoS One. 2013;8(1):e53956. doi: 10.1371/journal.pone.0053956. Epub 2013 Jan 18.

2.

Theoretical and computational modeling of target-site search kinetics in vitro and in vivo.

Koslover EF, Díaz de la Rosa MA, Spakowitz AJ.

Biophys J. 2011 Aug 17;101(4):856-65. doi: 10.1016/j.bpj.2011.06.066.

3.

The lac repressor displays facilitated diffusion in living cells.

Hammar P, Leroy P, Mahmutovic A, Marklund EG, Berg OG, Elf J.

Science. 2012 Jun 22;336(6088):1595-8. doi: 10.1126/science.1221648.

4.

Generalized facilitated diffusion model for DNA-binding proteins with search and recognition states.

Bauer M, Metzler R.

Biophys J. 2012 May 16;102(10):2321-30. doi: 10.1016/j.bpj.2012.04.008. Epub 2012 May 15.

6.

Gene location and DNA density determine transcription factor distributions in Escherichia coli.

Kuhlman TE, Cox EC.

Mol Syst Biol. 2012;8:610. doi: 10.1038/msb.2012.42.

7.

Quantitative influence of macromolecular crowding on gene regulation kinetics.

Tabaka M, Kalwarczyk T, Hołyst R.

Nucleic Acids Res. 2014 Jan;42(2):727-38. doi: 10.1093/nar/gkt907. Epub 2013 Oct 10.

8.

DNA-binding-protein inhomogeneity in E. coli modeled as biphasic facilitated diffusion.

Kuhlman TE, Cox EC.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Aug;88(2):022701. Epub 2013 Aug 1.

PMID:
24032858
9.

Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potential.

Slutsky M, Mirny LA.

Biophys J. 2004 Dec;87(6):4021-35. Epub 2004 Oct 1.

10.

Biochemistry. Completing the view of transcriptional regulation.

von Hippel PH.

Science. 2004 Jul 16;305(5682):350-2. No abstract available.

PMID:
15256661
11.

Effect of DNA conformation on facilitated diffusion.

Brackley CA, Cates ME, Marenduzzo D.

Biochem Soc Trans. 2013 Apr;41(2):582-8. doi: 10.1042/BST20120234. Review.

PMID:
23514158
13.

The regional rule for bacterial base composition.

Mitchison G.

Trends Genet. 2005 Aug;21(8):440-3.

PMID:
15978695
14.

Transcription-factor binding and sliding on DNA studied using micro- and macroscopic models.

Marklund EG, Mahmutovic A, Berg OG, Hammar P, van der Spoel D, Fange D, Elf J.

Proc Natl Acad Sci U S A. 2013 Dec 3;110(49):19796-801. doi: 10.1073/pnas.1307905110. Epub 2013 Nov 12.

15.

Spatial effects on the speed and reliability of protein-DNA search.

Wunderlich Z, Mirny LA.

Nucleic Acids Res. 2008 Jun;36(11):3570-8. doi: 10.1093/nar/gkn173. Epub 2008 May 3.

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18.

Bacterial repression loops require enhanced DNA flexibility.

Becker NA, Kahn JD, Maher LJ 3rd.

J Mol Biol. 2005 Jun 17;349(4):716-30. Erratum in: J Mol Biol. 2005 Nov 4;353(4):924-6.

PMID:
15893770
20.

First-passage time analysis of a one-dimensional diffusion-reaction model: application to protein transport along DNA.

Mayo ML, Perkins EJ, Ghosh P.

BMC Bioinformatics. 2011 Oct 18;12 Suppl 10:S18. doi: 10.1186/1471-2105-12-S10-S18.

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