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Results: 1 to 20 of 153

1.

Switchgrass genomic diversity, ploidy, and evolution: novel insights from a network-based SNP discovery protocol.

Lu F, Lipka AE, Glaubitz J, Elshire R, Cherney JH, Casler MD, Buckler ES, Costich DE.

PLoS Genet. 2013;9(1):e1003215. doi: 10.1371/journal.pgen.1003215. Epub 2013 Jan 17.

PMID:
23349638
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

SNP discovery with EST and NextGen sequencing in switchgrass (Panicum virgatum L.).

Ersoz ES, Wright MH, Pangilinan JL, Sheehan MJ, Tobias C, Casler MD, Buckler ES, Costich DE.

PLoS One. 2012;7(9):e44112. doi: 10.1371/journal.pone.0044112. Epub 2012 Sep 25.

PMID:
23049744
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Genomic diversity in switchgrass (Panicum virgatum): from the continental scale to a dune landscape.

Morris GP, Grabowski PP, Borevitz JO.

Mol Ecol. 2011 Dec;20(23):4938-52. doi: 10.1111/j.1365-294X.2011.05335.x. Epub 2011 Nov 8.

PMID:
22060816
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Nucleotide polymorphism and copy number variant detection using exome capture and next generation sequencing in the polyploid grass Panicum virgatum.

Evans J, Kim J, Childs KL, Vaillancourt B, Crisovan E, Nandety A, Gerhardt DJ, Richmond TA, Jeddeloh JA, Kaeppler SM, Casler MD, Buell CR.

Plant J. 2014 Jun 20. doi: 10.1111/tpj.12601. [Epub ahead of print]

PMID:
24947485
[PubMed - as supplied by publisher]
5.

Five nuclear loci resolve the polyploid history of switchgrass (Panicum virgatum L.) and relatives.

Triplett JK, Wang Y, Zhong J, Kellogg EA.

PLoS One. 2012;7(6):e38702. doi: 10.1371/journal.pone.0038702. Epub 2012 Jun 18.

PMID:
22719924
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

New genomic resources for switchgrass: a BAC library and comparative analysis of homoeologous genomic regions harboring bioenergy traits.

Saski CA, Li Z, Feltus FA, Luo H.

BMC Genomics. 2011 Jul 18;12:369. doi: 10.1186/1471-2164-12-369.

PMID:
21767393
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Reference genome sequence of the model plant Setaria.

Bennetzen JL, Schmutz J, Wang H, Percifield R, Hawkins J, Pontaroli AC, Estep M, Feng L, Vaughn JN, Grimwood J, Jenkins J, Barry K, Lindquist E, Hellsten U, Deshpande S, Wang X, Wu X, Mitros T, Triplett J, Yang X, Ye CY, Mauro-Herrera M, Wang L, Li P, Sharma M, Sharma R, Ronald PC, Panaud O, Kellogg EA, Brutnell TP, Doust AN, Tuskan GA, Rokhsar D, Devos KM.

Nat Biotechnol. 2012 May 13;30(6):555-61. doi: 10.1038/nbt.2196.

PMID:
22580951
[PubMed - indexed for MEDLINE]
8.

Population genomic variation reveals roles of history, adaptation, and ploidy in switchgrass.

Grabowski PP, Morris GP, Casler MD, Borevitz JO.

Mol Ecol. 2014 Jun 24. doi: 10.1111/mec.12845. [Epub ahead of print]

PMID:
24962137
[PubMed - as supplied by publisher]
9.

A genome-wide survey of switchgrass genome structure and organization.

Sharma MK, Sharma R, Cao P, Jenkins J, Bartley LE, Qualls M, Grimwood J, Schmutz J, Rokhsar D, Ronald PC.

PLoS One. 2012;7(4):e33892. doi: 10.1371/journal.pone.0033892. Epub 2012 Apr 12.

PMID:
22511929
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Post-glacial evolution of Panicum virgatum: centers of diversity and gene pools revealed by SSR markers and cpDNA sequences.

Zhang Y, Zalapa JE, Jakubowski AR, Price DL, Acharya A, Wei Y, Brummer EC, Kaeppler SM, Casler MD.

Genetica. 2011 Jul;139(7):933-48. doi: 10.1007/s10709-011-9597-6. Epub 2011 Jul 23.

PMID:
21786028
[PubMed - indexed for MEDLINE]
11.

Development of a genome-wide multiple duplex-SSR protocol and its applications for the identification of selfed progeny in switchgrass.

Liu L, Wu Y.

BMC Genomics. 2012 Oct 3;13:522. doi: 10.1186/1471-2164-13-522.

PMID:
23031617
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Exploring the switchgrass transcriptome using second-generation sequencing technology.

Wang Y, Zeng X, Iyer NJ, Bryant DW, Mockler TC, Mahalingam R.

PLoS One. 2012;7(3):e34225. doi: 10.1371/journal.pone.0034225. Epub 2012 Mar 29.

PMID:
22479570
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential.

Zhang G, Liu X, Quan Z, Cheng S, Xu X, Pan S, Xie M, Zeng P, Yue Z, Wang W, Tao Y, Bian C, Han C, Xia Q, Peng X, Cao R, Yang X, Zhan D, Hu J, Zhang Y, Li H, Li H, Li N, Wang J, Wang C, Wang R, Guo T, Cai Y, Liu C, Xiang H, Shi Q, Huang P, Chen Q, Li Y, Wang J, Zhao Z, Wang J.

Nat Biotechnol. 2012 May 13;30(6):549-54. doi: 10.1038/nbt.2195.

PMID:
22580950
[PubMed - indexed for MEDLINE]
14.

Genetic diversity in tetraploid switchgrass revealed by AFLP marker polymorphisms.

Todd J, Wu YQ, Wang Z, Samuels T.

Genet Mol Res. 2011 Nov 29;10(4):2976-86. doi: 10.4238/2011.November.29.8.

PMID:
22180031
[PubMed - indexed for MEDLINE]
Free Article
15.

Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms.

You FM, Deal KR, Wang J, Britton MT, Fass JN, Lin D, Dandekar AM, Leslie CA, Aradhya M, Luo MC, Dvorak J.

BMC Genomics. 2012 Jul 31;13:354. doi: 10.1186/1471-2164-13-354.

PMID:
22849334
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Karyotype variation is indicative of subgenomic and ecotypic differentiation in switchgrass.

Young HA, Sarath G, Tobias CM.

BMC Plant Biol. 2012 Jul 26;12:117. doi: 10.1186/1471-2229-12-117.

PMID:
22834676
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Development of 1,030 genomic SSR markers in switchgrass.

Wang YW, Samuels TD, Wu YQ.

Theor Appl Genet. 2011 Mar;122(4):677-86. doi: 10.1007/s00122-010-1477-4. Epub 2010 Oct 27.

PMID:
20978736
[PubMed - indexed for MEDLINE]
18.

Sequence-based novel genomic microsatellite markers for robust genotyping purposes in foxtail millet [Setaria italica (L.) P. Beauv].

Gupta S, Kumari K, Sahu PP, Vidapu S, Prasad M.

Plant Cell Rep. 2012 Feb;31(2):323-37. doi: 10.1007/s00299-011-1168-x. Epub 2011 Oct 13.

PMID:
21993813
[PubMed - indexed for MEDLINE]
19.

Genome-wide development and use of microsatellite markers for large-scale genotyping applications in foxtail millet [Setaria italica (L.)].

Pandey G, Misra G, Kumari K, Gupta S, Parida SK, Chattopadhyay D, Prasad M.

DNA Res. 2013 Apr;20(2):197-207. doi: 10.1093/dnares/dst002. Epub 2013 Feb 3.

PMID:
23382459
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica).

Jia G, Huang X, Zhi H, Zhao Y, Zhao Q, Li W, Chai Y, Yang L, Liu K, Lu H, Zhu C, Lu Y, Zhou C, Fan D, Weng Q, Guo Y, Huang T, Zhang L, Lu T, Feng Q, Hao H, Liu H, Lu P, Zhang N, Li Y, Guo E, Wang S, Wang S, Liu J, Zhang W, Chen G, Zhang B, Li W, Wang Y, Li H, Zhao B, Li J, Diao X, Han B.

Nat Genet. 2013 Aug;45(8):957-61. doi: 10.1038/ng.2673. Epub 2013 Jun 23.

PMID:
23793027
[PubMed - indexed for MEDLINE]

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