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Items: 1 to 20 of 112

1.

The fate of the messenger is pre-determined: a new model for regulation of gene expression.

Haimovich G, Choder M, Singer RH, Trcek T.

Biochim Biophys Acta. 2013 Jun-Jul;1829(6-7):643-53. doi: 10.1016/j.bbagrm.2013.01.004. Epub 2013 Jan 19. Review.

2.

Coupled evolution of transcription and mRNA degradation.

Dori-Bachash M, Shema E, Tirosh I.

PLoS Biol. 2011 Jul;9(7):e1001106. doi: 10.1371/journal.pbio.1001106. Epub 2011 Jul 19.

3.

Coupling mRNA synthesis and decay.

Braun KA, Young ET.

Mol Cell Biol. 2014 Nov 15;34(22):4078-87. doi: 10.1128/MCB.00535-14. Epub 2014 Aug 25. Review.

4.

Transcriptome kinetics is governed by a genome-wide coupling of mRNA production and degradation: a role for RNA Pol II.

Shalem O, Groisman B, Choder M, Dahan O, Pilpel Y.

PLoS Genet. 2011 Sep;7(9):e1002273. doi: 10.1371/journal.pgen.1002273. Epub 2011 Sep 8. Erratum in: PLoS Genet. 2011 Sep;7(9). doi: 10.1371/annotation/7919492c-3e4b-4363-96da-f75281c1340c.

5.

The AMP-activated protein kinase Snf1 regulates transcription factor binding, RNA polymerase II activity, and mRNA stability of glucose-repressed genes in Saccharomyces cerevisiae.

Young ET, Zhang C, Shokat KM, Parua PK, Braun KA.

J Biol Chem. 2012 Aug 17;287(34):29021-34. doi: 10.1074/jbc.M112.380147. Epub 2012 Jul 2.

6.

The eukaryotic transcriptional machinery regulates mRNA translation and decay in the cytoplasm.

Dahan N, Choder M.

Biochim Biophys Acta. 2013 Jan;1829(1):169-73. doi: 10.1016/j.bbagrm.2012.08.004. Epub 2012 Sep 6. Review.

PMID:
22982191
7.

Gene expression is circular: factors for mRNA degradation also foster mRNA synthesis.

Haimovich G, Medina DA, Causse SZ, Garber M, Millán-Zambrano G, Barkai O, Chávez S, Pérez-Ortín JE, Darzacq X, Choder M.

Cell. 2013 May 23;153(5):1000-11. doi: 10.1016/j.cell.2013.05.012.

8.
9.

mRNA export and gene expression: the SAGA-TREX-2 connection.

García-Oliver E, García-Molinero V, Rodríguez-Navarro S.

Biochim Biophys Acta. 2012 Jun;1819(6):555-65. doi: 10.1016/j.bbagrm.2011.11.011. Epub 2011 Dec 8. Review.

PMID:
22178374
10.

Cytoplasmic deadenylation: regulation of mRNA fate.

Wiederhold K, Passmore LA.

Biochem Soc Trans. 2010 Dec;38(6):1531-6. doi: 10.1042/BST0381531. Review.

11.

Dcp2 phosphorylation by Ste20 modulates stress granule assembly and mRNA decay in Saccharomyces cerevisiae.

Yoon JH, Choi EJ, Parker R.

J Cell Biol. 2010 May 31;189(5):813-27. doi: 10.1083/jcb.200912019.

12.

Dynamic profiling of mRNA turnover reveals gene-specific and system-wide regulation of mRNA decay.

Munchel SE, Shultzaberger RK, Takizawa N, Weis K.

Mol Biol Cell. 2011 Aug 1;22(15):2787-95. doi: 10.1091/mbc.E11-01-0028. Epub 2011 Jun 16.

13.

Analysis of cytoplasmic mRNA decay in Saccharomyces cerevisiae.

Passos DO, Parker R.

Methods Enzymol. 2008;448:409-27. doi: 10.1016/S0076-6879(08)02620-7.

14.

A complete set of nascent transcription rates for yeast genes.

Pelechano V, Chávez S, Pérez-Ortín JE.

PLoS One. 2010 Nov 16;5(11):e15442. doi: 10.1371/journal.pone.0015442. Erratum in: PLoS One. 2014;9(12):e115560.

15.

Nonsense-mediated decay of ash1 nonsense transcripts in Saccharomyces cerevisiae.

Zheng W, Finkel JS, Landers SM, Long RM, Culbertson MR.

Genetics. 2008 Nov;180(3):1391-405. doi: 10.1534/genetics.108.095737. Epub 2008 Sep 14.

16.

Specific and global regulation of mRNA stability during osmotic stress in Saccharomyces cerevisiae.

Romero-Santacreu L, Moreno J, Pérez-Ortín JE, Alepuz P.

RNA. 2009 Jun;15(6):1110-20. doi: 10.1261/rna.1435709. Epub 2009 Apr 15.

17.

Comparative dynamic transcriptome analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation.

Sun M, Schwalb B, Schulz D, Pirkl N, Etzold S, Larivière L, Maier KC, Seizl M, Tresch A, Cramer P.

Genome Res. 2012 Jul;22(7):1350-9. doi: 10.1101/gr.130161.111. Epub 2012 Mar 30.

18.

The control of elongation by the yeast Ccr4-not complex.

Reese JC.

Biochim Biophys Acta. 2013 Jan;1829(1):127-33. doi: 10.1016/j.bbagrm.2012.09.001. Epub 2012 Sep 10. Review.

19.

The Rpb4/7 module of RNA polymerase II is required for carbon catabolite repressor protein 4-negative on TATA (Ccr4-not) complex to promote elongation.

Babbarwal V, Fu J, Reese JC.

J Biol Chem. 2014 Nov 28;289(48):33125-30. doi: 10.1074/jbc.C114.601088. Epub 2014 Oct 14.

20.

Transcription in the nucleus and mRNA decay in the cytoplasm are coupled processes.

Goler-Baron V, Selitrennik M, Barkai O, Haimovich G, Lotan R, Choder M.

Genes Dev. 2008 Aug 1;22(15):2022-7. doi: 10.1101/gad.473608.

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