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Results: 1 to 20 of 84

1.

A biophysical miRNA-mRNA interaction model infers canonical and noncanonical targets.

Khorshid M, Hausser J, Zavolan M, van Nimwegen E.

Nat Methods. 2013 Mar;10(3):253-5. doi: 10.1038/nmeth.2341. Epub 2013 Jan 20.

PMID:
23334102
[PubMed - indexed for MEDLINE]
2.

Transcriptome-wide miR-155 binding map reveals widespread noncanonical microRNA targeting.

Loeb GB, Khan AA, Canner D, Hiatt JB, Shendure J, Darnell RB, Leslie CS, Rudensky AY.

Mol Cell. 2012 Dec 14;48(5):760-70. doi: 10.1016/j.molcel.2012.10.002. Epub 2012 Nov 8.

PMID:
23142080
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding.

Helwak A, Kudla G, Dudnakova T, Tollervey D.

Cell. 2013 Apr 25;153(3):654-65. doi: 10.1016/j.cell.2013.03.043.

PMID:
23622248
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

MicroRNAs and their isomiRs function cooperatively to target common biological pathways.

Cloonan N, Wani S, Xu Q, Gu J, Lea K, Heater S, Barbacioru C, Steptoe AL, Martin HC, Nourbakhsh E, Krishnan K, Gardiner B, Wang X, Nones K, Steen JA, Matigian NA, Wood DL, Kassahn KS, Waddell N, Shepherd J, Lee C, Ichikawa J, McKernan K, Bramlett K, Kuersten S, Grimmond SM.

Genome Biol. 2011 Dec 30;12(12):R126. doi: 10.1186/gb-2011-12-12-r126.

PMID:
22208850
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Identification and consequences of miRNA-target interactions--beyond repression of gene expression.

Hausser J, Zavolan M.

Nat Rev Genet. 2014 Sep;15(9):599-612. doi: 10.1038/nrg3765. Epub 2014 Jul 15. Review. Erratum in: Nat Rev Genet. 2014 Oct;15(10):702.

PMID:
25022902
[PubMed - indexed for MEDLINE]
6.

CLIP-based prediction of mammalian microRNA binding sites.

Liu C, Mallick B, Long D, Rennie WA, Wolenc A, Carmack CS, Ding Y.

Nucleic Acids Res. 2013 Aug;41(14):e138. doi: 10.1093/nar/gkt435. Epub 2013 May 22.

PMID:
23703212
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Identifying mRNA sequence elements for target recognition by human Argonaute proteins.

Li J, Kim T, Nutiu R, Ray D, Hughes TR, Zhang Z.

Genome Res. 2014 May;24(5):775-85. doi: 10.1101/gr.162230.113. Epub 2014 Mar 24.

PMID:
24663241
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Remodeling of Ago2-mRNA interactions upon cellular stress reflects miRNA complementarity and correlates with altered translation rates.

Karginov FV, Hannon GJ.

Genes Dev. 2013 Jul 15;27(14):1624-32. doi: 10.1101/gad.215939.113. Epub 2013 Jul 3.

PMID:
23824327
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Relative contribution of sequence and structure features to the mRNA binding of Argonaute/EIF2C-miRNA complexes and the degradation of miRNA targets.

Hausser J, Landthaler M, Jaskiewicz L, Gaidatzis D, Zavolan M.

Genome Res. 2009 Nov;19(11):2009-20. doi: 10.1101/gr.091181.109. Epub 2009 Sep 18.

PMID:
19767416
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The role of GW182 proteins in miRNA-mediated gene silencing.

Braun JE, Huntzinger E, Izaurralde E.

Adv Exp Med Biol. 2013;768:147-63. doi: 10.1007/978-1-4614-5107-5_9. Review.

PMID:
23224969
[PubMed - indexed for MEDLINE]
11.

Unambiguous identification of miRNA:target site interactions by different types of ligation reactions.

Grosswendt S, Filipchyk A, Manzano M, Klironomos F, Schilling M, Herzog M, Gottwein E, Rajewsky N.

Mol Cell. 2014 Jun 19;54(6):1042-54. doi: 10.1016/j.molcel.2014.03.049. Epub 2014 May 22.

PMID:
24857550
[PubMed - indexed for MEDLINE]
12.

The sufficient minimal set of miRNA seed types.

Ellwanger DC, Büttner FA, Mewes HW, Stümpflen V.

Bioinformatics. 2011 May 15;27(10):1346-50. doi: 10.1093/bioinformatics/btr149. Epub 2011 Mar 26.

PMID:
21441577
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Transcriptome-wide discovery of microRNA binding sites in human brain.

Boudreau RL, Jiang P, Gilmore BL, Spengler RM, Tirabassi R, Nelson JA, Ross CA, Xing Y, Davidson BL.

Neuron. 2014 Jan 22;81(2):294-305. doi: 10.1016/j.neuron.2013.10.062. Epub 2014 Jan 2.

PMID:
24389009
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Association of Argonaute proteins and microRNAs can occur after cell lysis.

Riley KJ, Yario TA, Steitz JA.

RNA. 2012 Sep;18(9):1581-5. doi: 10.1261/rna.034934.112. Epub 2012 Jul 26.

PMID:
22836356
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Analysis of microRNA-target interactions by a target structure based hybridization model.

Long D, Chan CY, Ding Y.

Pac Symp Biocomput. 2008:64-74.

PMID:
18232104
[PubMed - indexed for MEDLINE]
Free Article
16.

Argonaute CLIP--a method to identify in vivo targets of miRNAs.

Jaskiewicz L, Bilen B, Hausser J, Zavolan M.

Methods. 2012 Oct;58(2):106-12. doi: 10.1016/j.ymeth.2012.09.006. Epub 2012 Sep 27.

PMID:
23022257
[PubMed - indexed for MEDLINE]
17.

Tandem affinity purification of miRNA target mRNAs (TAP-Tar).

Nonne N, Ameyar-Zazoua M, Souidi M, Harel-Bellan A.

Nucleic Acids Res. 2010 Mar;38(4):e20. doi: 10.1093/nar/gkp1100. Epub 2009 Dec 2.

PMID:
19955234
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genome-wide identification of miRNA targets by PAR-CLIP.

Hafner M, Lianoglou S, Tuschl T, Betel D.

Methods. 2012 Oct;58(2):94-105. doi: 10.1016/j.ymeth.2012.08.006. Epub 2012 Aug 19.

PMID:
22926237
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Thermodynamic basis of selectivity in guide-target-mismatched RNA interference.

Joseph TT, Osman R.

Proteins. 2012 May;80(5):1283-98. doi: 10.1002/prot.24025. Epub 2012 Feb 10.

PMID:
22275138
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data.

Corcoran DL, Georgiev S, Mukherjee N, Gottwein E, Skalsky RL, Keene JD, Ohler U.

Genome Biol. 2011 Aug 18;12(8):R79. doi: 10.1186/gb-2011-12-8-r79.

PMID:
21851591
[PubMed - indexed for MEDLINE]
Free PMC Article

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