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Results: 1 to 20 of 88

1.

Effect of temperature and capsid tail on the packing and ejection of viral DNA.

Al Lawati A, Ali I, Al Barwani M.

PLoS One. 2013;8(1):e52958. doi: 10.1371/journal.pone.0052958. Epub 2013 Jan 8.

PMID:
23320080
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Influence of ions on genome packaging and ejection: a molecular dynamics study.

Ali I, Marenduzzo D.

J Chem Phys. 2011 Sep 7;135(9):095101. doi: 10.1063/1.3617416.

PMID:
21913781
[PubMed - indexed for MEDLINE]
3.

Polymer packaging and ejection in viral capsids: shape matters.

Ali I, Marenduzzo D, Yeomans JM.

Phys Rev Lett. 2006 May 26;96(20):208102. Epub 2006 May 26.

PMID:
16803211
[PubMed - indexed for MEDLINE]
4.

Ejection dynamics of polymeric chains from viral capsids: effect of solvent quality.

Ali I, Marenduzzo D, Yeomans JM.

Biophys J. 2008 Jun;94(11):4159-64. doi: 10.1529/biophysj.107.111963. Epub 2008 Jan 11.

PMID:
18192378
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Knot-controlled ejection of a polymer from a virus capsid.

Matthews R, Louis AA, Yeomans JM.

Phys Rev Lett. 2009 Feb 27;102(8):088101. Epub 2009 Feb 23.

PMID:
19257792
[PubMed - indexed for MEDLINE]
6.

Langevin dynamics simulations of genome packing in bacteriophage.

Forrey C, Muthukumar M.

Biophys J. 2006 Jul 1;91(1):25-41. Epub 2006 Apr 14.

PMID:
16617089
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Dynamics of polymer packaging.

Ali I, Marenduzzo D, Yeomans JM.

J Chem Phys. 2004 Nov 1;121(17):8635-41.

PMID:
15511190
[PubMed]
8.

Ionic effects on viral DNA packaging and portal motor function in bacteriophage phi 29.

Fuller DN, Rickgauer JP, Jardine PJ, Grimes S, Anderson DL, Smith DE.

Proc Natl Acad Sci U S A. 2007 Jul 3;104(27):11245-50. Epub 2007 Jun 7.

PMID:
17556543
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

DNA packaging in bacteriophage: is twist important?

Spakowitz AJ, Wang ZG.

Biophys J. 2005 Jun;88(6):3912-23. Epub 2005 Apr 1.

PMID:
15805174
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Structural and thermodynamic principles of viral packaging.

Petrov AS, Harvey SC.

Structure. 2007 Jan;15(1):21-7.

PMID:
17223529
[PubMed - indexed for MEDLINE]
Free Article
11.

Helical packaging of semiflexible polymers in bacteriophages.

Metzler R, Dommersnes PG.

Eur Biophys J. 2004 Oct;33(6):497-505. Epub 2004 Feb 26.

PMID:
14991252
[PubMed - indexed for MEDLINE]
12.

Shepherd model for knot-limited polymer ejection from a capsid.

Antal T, Krapivsky PL, Redner S.

J Theor Biol. 2009 Dec 7;261(3):488-93. doi: 10.1016/j.jtbi.2009.08.021. Epub 2009 Aug 22.

PMID:
19703473
[PubMed - indexed for MEDLINE]
13.

Topological friction strongly affects viral DNA ejection.

Marenduzzo D, Micheletti C, Orlandini E, Sumners de W.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20081-6. doi: 10.1073/pnas.1306601110. Epub 2013 Nov 22.

PMID:
24272939
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Pressure built by DNA packing inside virions: enough to drive DNA ejection in vitro, largely insufficient for delivery into the bacterial cytoplasm.

São-José C, de Frutos M, Raspaud E, Santos MA, Tavares P.

J Mol Biol. 2007 Nov 23;374(2):346-55. Epub 2007 Sep 20.

PMID:
17942117
[PubMed - indexed for MEDLINE]
15.

Thermodynamic basis for the genome to capsid charge relationship in viral encapsidation.

Ting CL, Wu J, Wang ZG.

Proc Natl Acad Sci U S A. 2011 Oct 11;108(41):16986-91. doi: 10.1073/pnas.1109307108. Epub 2011 Oct 3.

PMID:
21969546
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Forces and pressures in DNA packaging and release from viral capsids.

Tzlil S, Kindt JT, Gelbart WM, Ben-Shaul A.

Biophys J. 2003 Mar;84(3):1616-27.

PMID:
12609865
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Effects of salt concentrations and bending energy on the extent of ejection of phage genomes.

Evilevitch A, Fang LT, Yoffe AM, Castelnovo M, Rau DC, Parsegian VA, Gelbart WM, Knobler CM.

Biophys J. 2008 Feb 1;94(3):1110-20. Epub 2007 Sep 21.

PMID:
17890396
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Packaging of a polymer by a viral capsid: the interplay between polymer length and capsid size.

Hu Y, Zandi R, Anavitarte A, Knobler CM, Gelbart WM.

Biophys J. 2008 Feb 15;94(4):1428-36. Epub 2007 Nov 2.

PMID:
17981893
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Dynamic pathways for viral capsid assembly.

Hagan MF, Chandler D.

Biophys J. 2006 Jul 1;91(1):42-54. Epub 2006 Mar 24.

PMID:
16565055
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

[Capsid assembly and DNA encapsidation of adeno-associated virus].

Wang Q, Lü Y, Li Z, Diao Y, Xu R.

Sheng Wu Gong Cheng Xue Bao. 2011 Apr;27(4):531-8. Review. Chinese.

PMID:
21847986
[PubMed - indexed for MEDLINE]

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