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Results: 1 to 20 of 133

1.

Systems biology of cancer: moving toward the integrative study of the metabolic alterations in cancer cells.

Hernández Patiño CE, Jaime-Muñoz G, Resendis-Antonio O.

Front Physiol. 2013 Jan 3;3:481. doi: 10.3389/fphys.2012.00481. eCollection 2012.

PMID:
23316163
[PubMed]
Free PMC Article
2.

Systems biology of bacterial nitrogen fixation: high-throughput technology and its integrative description with constraint-based modeling.

Resendis-Antonio O, Hernández M, Salazar E, Contreras S, Batallar GM, Mora Y, Encarnación S.

BMC Syst Biol. 2011 Jul 29;5:120. doi: 10.1186/1752-0509-5-120.

PMID:
21801415
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Modeling core metabolism in cancer cells: surveying the topology underlying the Warburg effect.

Resendis-Antonio O, Checa A, Encarnación S.

PLoS One. 2010 Aug 25;5(8):e12383. doi: 10.1371/journal.pone.0012383.

PMID:
20811631
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Human metabolic network: reconstruction, simulation, and applications in systems biology.

Wu M, Chan C.

Metabolites. 2012 Mar 2;2(1):242-53. doi: 10.3390/metabo2010242.

PMID:
24957377
[PubMed]
Free PMC Article
5.

Modeling metabolism: A window toward a comprehensive interpretation of networks in cancer.

Resendis-Antonio O, González-Torres C, Jaime-Muñoz G, Hernandez-Patiño CE, Salgado-Muñoz CF.

Semin Cancer Biol. 2014 Apr 18. pii: S1044-579X(14)00051-0. doi: 10.1016/j.semcancer.2014.04.003. [Epub ahead of print] Review.

PMID:
24747697
[PubMed - as supplied by publisher]
Free Article
6.

Filling kinetic gaps: dynamic modeling of metabolism where detailed kinetic information is lacking.

Resendis-Antonio O.

PLoS One. 2009;4(3):e4967. doi: 10.1371/journal.pone.0004967. Epub 2009 Mar 23.

PMID:
19305506
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Genome-scale modeling of human metabolism - a systems biology approach.

Mardinoglu A, Gatto F, Nielsen J.

Biotechnol J. 2013 Sep;8(9):985-96. doi: 10.1002/biot.201200275. Epub 2013 Apr 24. Review.

PMID:
23613448
[PubMed - indexed for MEDLINE]
8.

Functional modules, structural topology, and optimal activity in metabolic networks.

Resendis-Antonio O, Hernández M, Mora Y, Encarnación S.

PLoS Comput Biol. 2012;8(10):e1002720. doi: 10.1371/journal.pcbi.1002720. Epub 2012 Oct 11.

PMID:
23071431
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genome-scale models of bacterial metabolism: reconstruction and applications.

Durot M, Bourguignon PY, Schachter V.

FEMS Microbiol Rev. 2009 Jan;33(1):164-90. doi: 10.1111/j.1574-6976.2008.00146.x. Epub 2008 Dec 3. Review.

PMID:
19067749
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Metabolic Cancer Biology: Structural-based analysis of cancer as a metabolic disease, new sights and opportunities for disease treatment.

Masoudi-Nejad A, Asgari Y.

Semin Cancer Biol. 2014 Feb 2. pii: S1044-579X(14)00023-6. doi: 10.1016/j.semcancer.2014.01.007. [Epub ahead of print] Review.

PMID:
24495661
[PubMed - as supplied by publisher]
11.

Integration of expression data in genome-scale metabolic network reconstructions.

Blazier AS, Papin JA.

Front Physiol. 2012 Aug 6;3:299. doi: 10.3389/fphys.2012.00299. eCollection 2012.

PMID:
22934050
[PubMed]
Free PMC Article
12.

Genome-scale constraint-based modeling of Geobacter metallireducens.

Sun J, Sayyar B, Butler JE, Pharkya P, Fahland TR, Famili I, Schilling CH, Lovley DR, Mahadevan R.

BMC Syst Biol. 2009 Jan 28;3:15. doi: 10.1186/1752-0509-3-15.

PMID:
19175927
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology.

Bordbar A, Feist AM, Usaite-Black R, Woodcock J, Palsson BO, Famili I.

BMC Syst Biol. 2011 Oct 31;5:180. doi: 10.1186/1752-0509-5-180.

PMID:
22041191
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Global reconstruction of the human metabolic network based on genomic and bibliomic data.

Duarte NC, Becker SA, Jamshidi N, Thiele I, Mo ML, Vo TD, Srivas R, Palsson BØ.

Proc Natl Acad Sci U S A. 2007 Feb 6;104(6):1777-82. Epub 2007 Jan 31.

PMID:
17267599
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).

Foffi G, Pastore A, Piazza F, Temussi PA.

Phys Biol. 2013 Aug 2;10(4):040301. [Epub ahead of print]

PMID:
23912807
[PubMed - as supplied by publisher]
16.

A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory.

Nogales J, Palsson BØ, Thiele I.

BMC Syst Biol. 2008 Sep 16;2:79. doi: 10.1186/1752-0509-2-79.

PMID:
18793442
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Using the reconstructed genome-scale human metabolic network to study physiology and pathology.

Bordbar A, Palsson BO.

J Intern Med. 2012 Feb;271(2):131-41. doi: 10.1111/j.1365-2796.2011.02494.x. Review.

PMID:
22142339
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Systems medicine and metabolic modelling.

Mardinoglu A, Nielsen J.

J Intern Med. 2012 Feb;271(2):142-54. doi: 10.1111/j.1365-2796.2011.02493.x. Review.

PMID:
22142312
[PubMed - indexed for MEDLINE]
19.

iAK692: a genome-scale metabolic model of Spirulina platensis C1.

Klanchui A, Khannapho C, Phodee A, Cheevadhanarak S, Meechai A.

BMC Syst Biol. 2012 Jun 15;6:71. doi: 10.1186/1752-0509-6-71.

PMID:
22703714
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Genome scale modeling in systems biology: algorithms and resources.

Najafi A, Bidkhori G, Bozorgmehr JH, Koch I, Masoudi-Nejad A.

Curr Genomics. 2014 Apr;15(2):130-59. doi: 10.2174/1389202915666140319002221.

PMID:
24822031
[PubMed]

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