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1.

Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics.

Varshney RK, Mohan SM, Gaur PM, Gangarao NV, Pandey MK, Bohra A, Sawargaonkar SL, Chitikineni A, Kimurto PK, Janila P, Saxena KB, Fikre A, Sharma M, Rathore A, Pratap A, Tripathi S, Datta S, Chaturvedi SK, Mallikarjuna N, Anuradha G, Babbar A, Choudhary AK, Mhase MB, Bharadwaj Ch, Mannur DM, Harer PN, Guo B, Liang X, Nadarajan N, Gowda CL.

Biotechnol Adv. 2013 Dec;31(8):1120-34. doi: 10.1016/j.biotechadv.2013.01.001. Epub 2013 Jan 11. Review.

2.

Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies.

Varshney RK, Kudapa H, Roorkiwal M, Thudi M, Pandey MK, Saxena RK, Chamarthi SK, Mohan SM, Mallikarjuna N, Upadhyaya H, Gaur PM, Krishnamurthy L, Saxena KB, Nigam SN, Pande S.

J Biosci. 2012 Nov;37(5):811-20. Review.

3.

Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.).

Varshney RK, Penmetsa RV, Dutta S, Kulwal PL, Saxena RK, Datta S, Sharma TR, Rosen B, Carrasquilla-Garcia N, Farmer AD, Dubey A, Saxena KB, Gao J, Fakrudin B, Singh MN, Singh BP, Wanjari KB, Yuan M, Srivastava RK, Kilian A, Upadhyaya HD, Mallikarjuna N, Town CD, Bruening GE, He G, May GD, McCombie R, Jackson SA, Singh NK, Cook DR.

Mol Breed. 2010 Oct;26(3):393-408. Epub 2009 Sep 17.

4.

Genomics-assisted breeding in four major pulse crops of developing countries: present status and prospects.

Bohra A, Pandey MK, Jha UC, Singh B, Singh IP, Datta D, Chaturvedi SK, Nadarajan N, Varshney RK.

Theor Appl Genet. 2014 Jun;127(6):1263-91. doi: 10.1007/s00122-014-2301-3. Epub 2014 Apr 8. Review.

5.

Integrated genomics and molecular breeding approaches for dissecting the complex quantitative traits in crop plants.

Kujur A, Saxena MS, Bajaj D, Laxmi, Parida SK.

J Biosci. 2013 Dec;38(5):971-87. Review.

6.

Orphan legume crops enter the genomics era!

Varshney RK, Close TJ, Singh NK, Hoisington DA, Cook DR.

Curr Opin Plant Biol. 2009 Apr;12(2):202-10. doi: 10.1016/j.pbi.2008.12.004. Epub 2009 Jan 20. Review.

PMID:
19157958
7.

Genomics-assisted breeding for boosting crop improvement in pigeonpea (Cajanus cajan).

Pazhamala L, Saxena RK, Singh VK, Sameerkumar CV, Kumar V, Sinha P, Patel K, Obala J, Kaoneka SR, Tongoona P, Shimelis HA, Gangarao NV, Odeny D, Rathore A, Dharmaraj PS, Yamini KN, Varshney RK.

Front Plant Sci. 2015 Feb 17;6:50. doi: 10.3389/fpls.2015.00050. eCollection 2015. Review.

8.

Integrated genomics, physiology and breeding approaches for improving drought tolerance in crops.

Mir RR, Zaman-Allah M, Sreenivasulu N, Trethowan R, Varshney RK.

Theor Appl Genet. 2012 Aug;125(4):625-45. doi: 10.1007/s00122-012-1904-9. Epub 2012 Jun 14. Review.

9.

Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.).

Bohra A, Dubey A, Saxena RK, Penmetsa RV, Poornima KN, Kumar N, Farmer AD, Srivani G, Upadhyaya HD, Gothalwal R, Ramesh S, Singh D, Saxena K, Kishor PB, Singh NK, Town CD, May GD, Cook DR, Varshney RK.

BMC Plant Biol. 2011 Mar 29;11:56. doi: 10.1186/1471-2229-11-56.

10.

The first set of EST resource for gene discovery and marker development in pigeonpea (Cajanus cajan L.).

Raju NL, Gnanesh BN, Lekha P, Jayashree B, Pande S, Hiremath PJ, Byregowda M, Singh NK, Varshney RK.

BMC Plant Biol. 2010 Mar 11;10:45. doi: 10.1186/1471-2229-10-45.

11.

An intra-specific consensus genetic map of pigeonpea [Cajanus cajan (L.) Millspaugh] derived from six mapping populations.

Bohra A, Saxena RK, Gnanesh BN, Saxena K, Byregowda M, Rathore A, Kavikishor PB, Cook DR, Varshney RK.

Theor Appl Genet. 2012 Oct;125(6):1325-38. doi: 10.1007/s00122-012-1916-5. Epub 2012 Jul 8.

12.

Waterlogging tolerance of crops: breeding, mechanism of tolerance, molecular approaches, and future prospects.

Ahmed F, Rafii MY, Ismail MR, Juraimi AS, Rahim HA, Asfaliza R, Latif MA.

Biomed Res Int. 2013;2013:963525. doi: 10.1155/2013/963525. Epub 2012 Dec 24. Review.

13.

Genomics and molecular breeding in lesser explored pulse crops: current trends and future opportunities.

Bohra A, Jha UC, Kishor PB, Pandey S, Singh NP.

Biotechnol Adv. 2014 Dec;32(8):1410-28. doi: 10.1016/j.biotechadv.2014.09.001. Epub 2014 Sep 6.

PMID:
25196916
14.

Emerging paradigms in genomics-based crop improvement.

Bohra A.

ScientificWorldJournal. 2013 Nov 17;2013:585467. doi: 10.1155/2013/585467. Review.

15.

Inducing drought tolerance in plants: recent advances.

Ashraf M.

Biotechnol Adv. 2010 Jan-Feb;28(1):169-83. doi: 10.1016/j.biotechadv.2009.11.005. Epub . Review.

PMID:
19914371
16.

Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa.

Hiremath PJ, Farmer A, Cannon SB, Woodward J, Kudapa H, Tuteja R, Kumar A, Bhanuprakash A, Mulaosmanovic B, Gujaria N, Krishnamurthy L, Gaur PM, Kavikishor PB, Shah T, Srinivasan R, Lohse M, Xiao Y, Town CD, Cook DR, May GD, Varshney RK.

Plant Biotechnol J. 2011 Oct;9(8):922-31. doi: 10.1111/j.1467-7652.2011.00625.x. Epub 2011 May 25.

17.

Using genetic mapping and genomics approaches in understanding and improving drought tolerance in pearl millet.

Yadav RS, Sehgal D, Vadez V.

J Exp Bot. 2011 Jan;62(2):397-408. doi: 10.1093/jxb/erq265. Epub 2010 Sep 5. Review.

18.

Advancing the STMS genomic resources for defining new locations on the intraspecific genetic linkage map of chickpea (Cicer arietinum L.).

Gaur R, Sethy NK, Choudhary S, Shokeen B, Gupta V, Bhatia S.

BMC Genomics. 2011 Feb 17;12:117. doi: 10.1186/1471-2164-12-117.

19.

Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.).

Ravi K, Vadez V, Isobe S, Mir RR, Guo Y, Nigam SN, Gowda MV, Radhakrishnan T, Bertioli DJ, Knapp SJ, Varshney RK.

Theor Appl Genet. 2011 Apr;122(6):1119-32. doi: 10.1007/s00122-010-1517-0. Epub 2010 Dec 30.

20.

Chickpea improvement: role of wild species and genetic markers.

Singh R, Sharma P, Varshney RK, Sharma SK, Singh NK.

Biotechnol Genet Eng Rev. 2008;25:267-313. Review.

PMID:
21412359
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