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2.

Phylogeography and genetic structure of the Canarian common chaffinch (Fringilla coelebs) inferred with mtDNA and microsatellite loci.

Suárez NM, Betancor E, Klassert TE, Almeida T, Hernández M, Pestano JJ.

Mol Phylogenet Evol. 2009 Nov;53(2):556-64. doi: 10.1016/j.ympev.2009.07.018. Epub 2009 Jul 24.

PMID:
19632343
3.

Obtaining mtDNA genomes from next-generation transcriptome sequencing: a case study on the basal Passerida (Aves: Passeriformes) phylogeny.

Nabholz B, Jarvis ED, Ellegren H.

Mol Phylogenet Evol. 2010 Oct;57(1):466-70. doi: 10.1016/j.ympev.2010.06.009. Epub 2010 Jun 25.

PMID:
20601014
4.

Near neutrality, rate heterogeneity, and linkage govern mitochondrial genome evolution in Atlantic cod (Gadus morhua) and other gadine fish.

Marshall HD, Coulson MW, Carr SM.

Mol Biol Evol. 2009 Mar;26(3):579-89. doi: 10.1093/molbev/msn279. Epub 2008 Dec 4.

6.

Molecular phylogeny of Carduelinae (Aves, Passeriformes, Fringillidae) proves polyphyletic origin of the genera Serinus and Carduelis and suggests redefined generic limits.

Nguembock B, Fjeldså J, Couloux A, Pasquet E.

Mol Phylogenet Evol. 2009 May;51(2):169-81. doi: 10.1016/j.ympev.2008.10.022. Epub 2008 Nov 6.

PMID:
19027082
7.
10.

The phylogenetic relationships and generic limits of finches (Fringillidae).

Zuccon D, Prŷs-Jones R, Rasmussen PC, Ericson PG.

Mol Phylogenet Evol. 2012 Feb;62(2):581-96. doi: 10.1016/j.ympev.2011.10.002. Epub 2011 Oct 17.

PMID:
22023825
11.

Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny.

Singh TR, Tsagkogeorga G, Delsuc F, Blanquart S, Shenkar N, Loya Y, Douzery EJ, Huchon D.

BMC Genomics. 2009 Nov 17;10:534. doi: 10.1186/1471-2164-10-534.

12.

Phylogenetic relationships of finches and allies based on nuclear and mitochondrial DNA.

Van der Meij MA, de Bakker MA, Bout RG.

Mol Phylogenet Evol. 2005 Jan;34(1):97-105.

PMID:
15579384
13.

Making the most of mitochondrial genomes--markers for phylogeny, molecular ecology and barcodes in Schistosoma (Platyhelminthes: Digenea).

Zarowiecki MZ, Huyse T, Littlewood DT.

Int J Parasitol. 2007 Oct;37(12):1401-18. Epub 2007 May 10.

PMID:
17570370
14.

Evolutionary rates of mitochondrial genomes correspond to diversification rates and to contemporary species richness in birds and reptiles.

Eo SH, DeWoody JA.

Proc Biol Sci. 2010 Dec 7;277(1700):3587-92. doi: 10.1098/rspb.2010.0965. Epub 2010 Jul 7.

15.

Rapidly evolving mitochondrial genome and directional selection in mitochondrial genes in the parasitic wasp nasonia (hymenoptera: pteromalidae).

Oliveira DC, Raychoudhury R, Lavrov DV, Werren JH.

Mol Biol Evol. 2008 Oct;25(10):2167-80. doi: 10.1093/molbev/msn159. Epub 2008 Jul 24.

16.

Lineage-specific selection in human mtDNA: lack of polymorphisms in a segment of MTND5 gene in haplogroup J.

Moilanen JS, Finnila S, Majamaa K.

Mol Biol Evol. 2003 Dec;20(12):2132-42. Epub 2003 Aug 29.

17.

Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages.

Brown JW, Rest JS, García-Moreno J, Sorenson MD, Mindell DP.

BMC Biol. 2008 Jan 28;6:6. doi: 10.1186/1741-7007-6-6.

18.

A preliminary mitochondrial genome phylogeny of Orthoptera (Insecta) and approaches to maximizing phylogenetic signal found within mitochondrial genome data.

Fenn JD, Song H, Cameron SL, Whiting MF.

Mol Phylogenet Evol. 2008 Oct;49(1):59-68. doi: 10.1016/j.ympev.2008.07.004. Epub 2008 Jul 15.

PMID:
18672078
19.

The species status of the Corsican finch Carduelis corsicana assessed by three genetic markers with different rates of evolution.

Förschler MI, Senar JC, Perret P, Björklund M.

Mol Phylogenet Evol. 2009 Jul;52(1):234-40. doi: 10.1016/j.ympev.2009.02.014. Epub 2009 Feb 26.

PMID:
19249374
20.

Parallel rate heterogeneity in chloroplast and mitochondrial genomes of Brazil nut trees (Lecythidaceae) is consistent with lineage effects.

Soria-Hernanz DF, Braverman JM, Hamilton MB.

Mol Biol Evol. 2008 Jul;25(7):1282-96. doi: 10.1093/molbev/msn074. Epub 2008 Apr 2.

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