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Similar articles for PubMed (Select 23308364)

1.

Functional annotation of the human chromosome 7 "missing" proteins: a bioinformatics approach.

Ranganathan S, Khan JM, Garg G, Baker MS.

J Proteome Res. 2013 Jun 7;12(6):2504-10. doi: 10.1021/pr301082p. Epub 2013 Jan 11.

PMID:
23308364
2.

Protannotator: a semiautomated pipeline for chromosome-wise functional annotation of the "missing" human proteome.

Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S.

J Proteome Res. 2014 Jan 3;13(1):76-83. doi: 10.1021/pr400794x. Epub 2013 Dec 13.

PMID:
24313344
3.

Identification of missing proteins in the neXtProt database and unregistered phosphopeptides in the PhosphoSitePlus database as part of the Chromosome-centric Human Proteome Project.

Shiromizu T, Adachi J, Watanabe S, Murakami T, Kuga T, Muraoka S, Tomonaga T.

J Proteome Res. 2013 Jun 7;12(6):2414-21. doi: 10.1021/pr300825v. Epub 2013 Jan 11.

PMID:
23312004
4.

Chromosome-centric human proteome project: deciphering proteins associated with glioma and neurodegenerative disorders on chromosome 12.

Gupta MK, Jayaram S, Madugundu AK, Chavan S, Advani J, Pandey A, Thongboonkerd V, Sirdeshmukh R.

J Proteome Res. 2014 Jul 3;13(7):3178-90. doi: 10.1021/pr500023p. Epub 2014 Jun 24.

PMID:
24804578
5.

Identification and characterization of proteins encoded by chromosome 12 as part of chromosome-centric human proteome project.

Manda SS, Nirujogi RS, Pinto SM, Kim MS, Datta KK, Sirdeshmukh R, Prasad TS, Thongboonkerd V, Pandey A, Gowda H.

J Proteome Res. 2014 Jul 3;13(7):3166-77. doi: 10.1021/pr401123v. Epub 2014 Jun 24.

PMID:
24960282
6.

A chromosome-centric human proteome project (C-HPP) to characterize the sets of proteins encoded in chromosome 17.

Liu S, Im H, Bairoch A, Cristofanilli M, Chen R, Deutsch EW, Dalton S, Fenyo D, Fanayan S, Gates C, Gaudet P, Hincapie M, Hanash S, Kim H, Jeong SK, Lundberg E, Mias G, Menon R, Mu Z, Nice E, Paik YK, Uhlen M, Wells L, Wu SL, Yan F, Zhang F, Zhang Y, Snyder M, Omenn GS, Beavis RC, Hancock WS.

J Proteome Res. 2013 Jan 4;12(1):45-57. doi: 10.1021/pr300985j. Epub 2012 Dec 21.

8.

CAPER: a chromosome-assembled human proteome browsER.

Guo F, Wang D, Liu Z, Lu L, Zhang W, Sun H, Zhang H, Ma J, Wu S, Li N, Jiang Y, Zhu W, Qin J, Xu P, Li D, He F.

J Proteome Res. 2013 Jan 4;12(1):179-86. doi: 10.1021/pr300831z. Epub 2012 Dec 20.

PMID:
23256906
9.

A chromosome-centric analysis of antibodies directed toward the human proteome using Antibodypedia.

Alm T, von Feilitzen K, Lundberg E, Sivertsson Å, Uhlén M.

J Proteome Res. 2014 Mar 7;13(3):1669-76. doi: 10.1021/pr4011525. Epub 2014 Feb 17.

PMID:
24533432
10.

Functional annotation of proteome encoded by human chromosome 22.

Pinto SM, Manda SS, Kim MS, Taylor K, Selvan LD, Balakrishnan L, Subbannayya T, Yan F, Prasad TS, Gowda H, Lee C, Hancock WS, Pandey A.

J Proteome Res. 2014 Jun 6;13(6):2749-60. doi: 10.1021/pr401169d. Epub 2014 Apr 29.

11.

CAPER 2.0: an interactive, configurable, and extensible workflow-based platform to analyze data sets from the Chromosome-centric Human Proteome Project.

Wang D, Liu Z, Guo F, Diao L, Li Y, Zhang X, Huang Z, Li D, He F.

J Proteome Res. 2014 Jan 3;13(1):99-106. doi: 10.1021/pr400795c. Epub 2013 Dec 3.

PMID:
24261964
12.

neXtProt: organizing protein knowledge in the context of human proteome projects.

Gaudet P, Argoud-Puy G, Cusin I, Duek P, Evalet O, Gateau A, Gleizes A, Pereira M, Zahn-Zabal M, Zwahlen C, Bairoch A, Lane L.

J Proteome Res. 2013 Jan 4;12(1):293-8. doi: 10.1021/pr300830v. Epub 2012 Dec 3.

PMID:
23205526
13.

The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.

Camon E, Magrane M, Barrell D, Lee V, Dimmer E, Maslen J, Binns D, Harte N, Lopez R, Apweiler R.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D262-6.

14.

Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions.

Khatun J, Yu Y, Wrobel JA, Risk BA, Gunawardena HP, Secrest A, Spitzer WJ, Xie L, Wang L, Chen X, Giddings MC.

BMC Genomics. 2013 Feb 28;14:141. doi: 10.1186/1471-2164-14-141.

15.

Comprehensive genome-wide proteomic analysis of human placental tissue for the Chromosome-Centric Human Proteome Project.

Lee HJ, Jeong SK, Na K, Lee MJ, Lee SH, Lim JS, Cha HJ, Cho JY, Kwon JY, Kim H, Song SY, Yoo JS, Park YM, Kim H, Hancock WS, Paik YK.

J Proteome Res. 2013 Jun 7;12(6):2458-66. doi: 10.1021/pr301040g. Epub 2013 Feb 14.

PMID:
23362793
16.

GenomewidePDB, a proteomic database exploring the comprehensive protein parts list and transcriptome landscape in human chromosomes.

Jeong SK, Lee HJ, Na K, Cho JY, Lee MJ, Kwon JY, Kim H, Park YM, Yoo JS, Hancock WS, Paik YK.

J Proteome Res. 2013 Jan 4;12(1):106-11. doi: 10.1021/pr3009447. Epub 2012 Dec 19.

PMID:
23252913
17.

The different proteomes of Chlamydomonas reinhardtii.

Valledor L, Recuenco-Munoz L, Egelhofer V, Wienkoop S, Weckwerth W.

J Proteomics. 2012 Oct 22;75(18):5883-7. doi: 10.1016/j.jprot.2012.07.045. Epub 2012 Aug 7.

PMID:
22967953
18.

The Human Proteome Organization Chromosome 6 Consortium: integrating chromosome-centric and biology/disease driven strategies.

Borchers CH, Kast J, Foster LJ, Siu KW, Overall CM, Binkowski TA, Hildebrand WH, Scherer A, Mansoor M, Keown PA; Human Proteome Organization Chromosome 6 Consortium.

J Proteomics. 2014 Apr 4;100:60-7. doi: 10.1016/j.jprot.2013.08.001. Epub 2013 Aug 8.

19.

annot8r: GO, EC and KEGG annotation of EST datasets.

Schmid R, Blaxter ML.

BMC Bioinformatics. 2008 Apr 9;9:180. doi: 10.1186/1471-2105-9-180.

20.

Contribution of antibody-based protein profiling to the human Chromosome-centric Proteome Project (C-HPP).

Fagerberg L, Oksvold P, Skogs M, Algenäs C, Lundberg E, Pontén F, Sivertsson A, Odeberg J, Klevebring D, Kampf C, Asplund A, Sjöstedt E, Al-Khalili Szigyarto C, Edqvist PH, Olsson I, Rydberg U, Hudson P, Ottosson Takanen J, Berling H, Björling L, Tegel H, Rockberg J, Nilsson P, Navani S, Jirström K, Mulder J, Schwenk JM, Zwahlen M, Hober S, Forsberg M, von Feilitzen K, Uhlén M.

J Proteome Res. 2013 Jun 7;12(6):2439-48. doi: 10.1021/pr300924j. Epub 2012 Dec 31.

PMID:
23276153
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