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Items: 1 to 20 of 127

1.

Components of selection in the evolution of the influenza virus: linkage effects beat inherent selection.

Illingworth CJ, Mustonen V.

PLoS Pathog. 2012 Dec;8(12):e1003091. doi: 10.1371/journal.ppat.1003091. Epub 2012 Dec 27.

2.

Clonal interference in the evolution of influenza.

Strelkowa N, Lässig M.

Genetics. 2012 Oct;192(2):671-82. doi: 10.1534/genetics.112.143396. Epub 2012 Jul 30.

3.

Quantifying selection and diversity in viruses by entropy methods, with application to the haemagglutinin of H3N2 influenza.

Pan K, Deem MW.

J R Soc Interface. 2011 Nov 7;8(64):1644-53. doi: 10.1098/rsif.2011.0105. Epub 2011 May 4.

5.

Detection of positive selection eliminating effects of structural constraints in hemagglutinin of H3N2 human influenza A virus.

Suzuki Y.

Infect Genet Evol. 2013 Jun;16:93-8. doi: 10.1016/j.meegid.2013.01.017. Epub 2013 Feb 9.

PMID:
23403095
6.

Positive selection operates continuously on hemagglutinin during evolution of H3N2 human influenza A virus.

Suzuki Y.

Gene. 2008 Dec 31;427(1-2):111-6. doi: 10.1016/j.gene.2008.09.012. Epub 2008 Sep 20.

PMID:
18848975
7.

Identifying selection in the within-host evolution of influenza using viral sequence data.

Illingworth CJ, Fischer A, Mustonen V.

PLoS Comput Biol. 2014 Jul 31;10(7):e1003755. doi: 10.1371/journal.pcbi.1003755. eCollection 2014 Jul.

8.

Evidence of positive selection acting at the human dopamine receptor D4 gene locus.

Ding YC, Chi HC, Grady DL, Morishima A, Kidd JR, Kidd KK, Flodman P, Spence MA, Schuck S, Swanson JM, Zhang YP, Moyzis RK.

Proc Natl Acad Sci U S A. 2002 Jan 8;99(1):309-14. Epub 2001 Dec 26.

9.

[Study on the detection of positive selected codons on HA1 sequence of human influenza A subtype H3N2].

Xu HL, Zhang WT, Zhao NQ, Jiang QW.

Zhonghua Liu Xing Bing Xue Za Zhi. 2007 Apr;28(4):385-9. Chinese.

PMID:
17850715
10.

Molecular evolution and balancing selection in the flavin-containing monooxygenase 3 gene (FMO3).

Allerston CK, Shimizu M, Fujieda M, Shephard EA, Yamazaki H, Phillips IR.

Pharmacogenet Genomics. 2007 Oct;17(10):827-39.

PMID:
17885620
11.

A genotype network reveals homoplastic cycles of convergent evolution in influenza A (H3N2) haemagglutinin.

Wagner A.

Proc Biol Sci. 2014 Jul 7;281(1786). pii: 20132763. doi: 10.1098/rspb.2013.2763.

12.

The case for selection at CCR5-Delta32.

Sabeti PC, Walsh E, Schaffner SF, Varilly P, Fry B, Hutcheson HB, Cullen M, Mikkelsen TS, Roy J, Patterson N, Cooper R, Reich D, Altshuler D, O'Brien S, Lander ES.

PLoS Biol. 2005 Nov;3(11):e378. Epub 2005 Nov 1.

13.

The evolution of human influenza A viruses from 1999 to 2006: a complete genome study.

Bragstad K, Nielsen LP, Fomsgaard A.

Virol J. 2008 Mar 7;5:40. doi: 10.1186/1743-422X-5-40.

14.

Genetic analysis of influenza A/H3N2 and A/H1N1 viruses circulating in Vietnam from 2001 to 2006.

Li D, Saito R, Le MT, Nguyen HL, Suzuki Y, Shobugawa Y, Dinh DT, Hoang PV, Tran HT, Nghiem HK, Hoang LT, Huynh LP, Nguyen HT, Nishikawa M, Suzuki H.

J Clin Microbiol. 2008 Feb;46(2):399-405. Epub 2007 Oct 17.

15.

Allele dynamics plots for the study of evolutionary dynamics in viral populations.

Steinbrück L, McHardy AC.

Nucleic Acids Res. 2011 Jan;39(1):e4. doi: 10.1093/nar/gkq909. Epub 2010 Oct 18.

16.

Quantifying selection acting on a complex trait using allele frequency time series data.

Illingworth CJ, Parts L, Schiffels S, Liti G, Mustonen V.

Mol Biol Evol. 2012 Apr;29(4):1187-97. doi: 10.1093/molbev/msr289. Epub 2011 Nov 23.

17.

Antigenic and genetic evolution of swine influenza A (H3N2) viruses in Europe.

de Jong JC, Smith DJ, Lapedes AS, Donatelli I, Campitelli L, Barigazzi G, Van Reeth K, Jones TC, Rimmelzwaan GF, Osterhaus AD, Fouchier RA.

J Virol. 2007 Apr;81(8):4315-22. Epub 2007 Feb 7.

18.

Haplotype evolution and linkage disequilibrium: A simulation study.

Calafell F, Grigorenko EL, Chikanian AA, Kidd KK.

Hum Hered. 2001;51(1-2):85-96.

PMID:
11096275
19.

The effects of linkage on comparative estimators of selection.

Chan CH, Hamblin S, Tanaka MM.

BMC Evol Biol. 2013 Nov 7;13:244. doi: 10.1186/1471-2148-13-244.

20.

Directional positive selection on an allele of arbitrary dominance.

Teshima KM, Przeworski M.

Genetics. 2006 Jan;172(1):713-8. Epub 2005 Oct 11.

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